Masahira Hattori

教授(任期付)

  • 46493 Citations
  • 75 h-Index
1984 …2019
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Research Output 1984 2019

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2013
60 Citations (Scopus)

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

Nakamura, Y., Mori, K., Saitoh, K., Oshima, K., Mekuchi, M., Sugaya, T., Shigenobu, Y., Ojima, N., Muta, S., Fujiwara, A., Yasuike, M., Oohara, I., Hirakawa, H., Chowdhury, V. S., Kobayashi, T., Nakajima, K., Sano, M., Wada, T., Tashiro, K., Ikeo, K. & 4 others, Hattori, M., Kuhara, S., Gojobori, T. & Inouye, K., 2013 Jul 2, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 27, p. 11061-11066 6 p.

Research output: Contribution to journalArticle

Retinal Pigments
Fishes
Genome
Tuna
Genes
27 Citations (Scopus)

Genome analysis suggests that the soil oligotrophic bacterium agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of aeschynomene indica

Okubo, T., Fukushima, S., Itakura, M., Oshima, K., Longtonglang, A., Teaumroong, N., Mitsui, H., Hattori, M., Hattori, R., Hattori, T. & Minamisawa, K., 2013 Apr, In : Applied and Environmental Microbiology. 79, 8, p. 2542-2551 10 p.

Research output: Contribution to journalArticle

Agromonas oligotrophica
Aeschynomene indica
Bradyrhizobium
soil bacteria
symbiont
52 Citations (Scopus)

Genomic Adaptation of the Lactobacillus casei Group

Toh, H., Oshima, K., Nakano, A., Takahata, M., Murakami, M., Takaki, T., Nishiyama, H., Igimi, S., Hattori, M. & Morita, H., 2013 Oct 8, In : PLoS One. 8, 10, e75073.

Research output: Contribution to journalArticle

Lactobacillus casei
Genes
genomics
Genome
genome
30 Citations (Scopus)

Genomic Analysis by Deep Sequencing of the Probiotic Lactobacillus brevis KB290 Harboring Nine Plasmids Reveals Genomic Stability

Fukao, M., Oshima, K., Morita, H., Toh, H., Suda, W., Kim, S. W., Suzuki, S., Yakabe, T., Hattori, M. & Yajima, N., 2013 Mar 27, In : PLoS One. 8, 3, e60521.

Research output: Contribution to journalArticle

Lactobacillus brevis
High-Throughput Nucleotide Sequencing
Genomic Instability
Probiotics
probiotics
4 Citations (Scopus)

Genomic features of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid

Shimizu-Kadota, M., Kato, H., Shiwa, Y., Oshima, K., Machii, M., Araya-Kojima, T., Zendo, T., Hattori, M., Sonomoto, K. & Yoshikawa, H., 2013, In : Bioscience, Biotechnology and Biochemistry. 77, 9, p. 1804-1808 5 p.

Research output: Contribution to journalArticle

Nisin
Synthetic Genes
Prophages
Horizontal Gene Transfer
Lactococcus lactis
21 Citations (Scopus)

Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector

Nakabachi, A., Nikoh, N., Oshima, K., Inoue, H., Ohkuma, M., Hongoh, Y., Miyagishima, S. Y., Hattori, M. & Fukatsu, T., 2013 Dec 4, In : PLoS One. 8, 12, e82612.

Research output: Contribution to journalArticle

Candidatus Liberibacter
Hemiptera
Psyllidae
endosymbionts
Pathogens
750 Citations (Scopus)

Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome

Yoshimoto, S., Loo, T. M., Atarashi, K., Kanda, H., Sato, S., Oyadomari, S., Iwakura, Y., Oshima, K., Morita, H., Hattori, M., Honda, K., Ishikawa, Y., Hara, E. & Ohtani, N., 2013, In : Nature. 499, 7456, p. 97-101 5 p.

Research output: Contribution to journalArticle

Liver Neoplasms
Obesity
Hepatocellular Carcinoma
Hepatic Stellate Cells
Deoxycholic Acid
10 Citations (Scopus)

Our Second Genome-Human Metagenome. How Next-Generation Sequencer Changes our Life Through Microbiology.

Song, S., Jarvie, T. & Hattori, M., 2013, In : Advances in Microbial Physiology. 62, p. 119-144 26 p.

Research output: Contribution to journalArticle

Metagenome
Human Genome
Metagenomics
Microbiology
Microbiota
13 Citations (Scopus)

Plasma membrane-localized Al-transporter from blue hydrangea sepals is a member of the anion permease family

Negishi, T., Oshima, K., Hattori, M. & Yoshida, K., 2013 May, In : Genes to Cells. 18, 5, p. 341-352 12 p.

Research output: Contribution to journalArticle

Hydrangea
Membrane Transport Proteins
Aluminum
Anions
Cell Membrane
37 Citations (Scopus)

Qualitative rather than quantitative changes are hallmarks of fibroblasts in bleomycin-induced pulmonary fibrosis

Tsukui, T., Ueha, S., Abe, J., Hashimoto, S. I., Shichino, S., Shimaoka, T., Shand, F. H. W., Arakawa, Y., Oshima, K., Hattori, M., Inagaki, Y., Tomura, M. & Matsushima, K., 2013 Sep, In : American Journal of Pathology. 183, 3, p. 758-773 16 p.

Research output: Contribution to journalArticle

Pulmonary Fibrosis
Fibroblasts
Osteopontin
Collagen Type I
Lung
119 Citations (Scopus)

Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing

Kim, S. W., Suda, W., Kim, S., Oshima, K., Fukuda, S., Ohno, H., Morita, H. & Hattori, M., 2013 Jun, In : DNA Research. 20, 3, p. 241-253 13 p.

Research output: Contribution to journalArticle

Probiotics
16S Ribosomal RNA
Bifidobacterium
Gastrointestinal Microbiome
Lactobacillus
23 Citations (Scopus)

Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils

Itoh, H., Ishii, S., Shiratori, Y., Oshima, K., Otsuka, S., Hattori, M. & Senoo, K., 2013, In : Microbes and Environments. 28, 3, p. 370-380 11 p.

Research output: Contribution to journalArticle

drained conditions
paddy soils
flooded conditions
water management
clone
4 Citations (Scopus)

Thermophile-fermented compost as a possible scavenging feed additive toprevent peroxidation

Miyamoto, H., Shimada, E., Satoh, T., Tanaka, R., Oshima, K., Suda, W., Fukuda, S., Nishiuchi, T., Matsuura, M., Mori, K., Miyamoto, H., Ohno, H., Hattori, M., Kodama, H. & Matsushita, T., 2013 Aug, In : Journal of Bioscience and Bioengineering. 116, 2, p. 203-208 6 p.

Research output: Contribution to journalArticle

Scavenging
Liver
Soil
Rats
Muscle
1076 Citations (Scopus)

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

Atarashi, K., Tanoue, T., Oshima, K., Suda, W., Nagano, Y., Nishikawa, H., Fukuda, S., Saito, T., Narushima, S., Hase, K., Kim, S., Fritz, J. V., Wilmes, P., Ueha, S., Matsushima, K., Ohno, H., Olle, B., Sakaguchi, S., Taniguchi, T., Morita, H. & 2 others, Hattori, M. & Honda, K., 2013, In : Nature. 500, 7461, p. 232-236 5 p.

Research output: Contribution to journalArticle

Clostridium
Microbiota
Inducible T-Cell Co-Stimulator Protein
Bacterial Antigens
Immune System Diseases
2012
67 Citations (Scopus)

Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters

Fukuda, S., Toh, H., Taylor, T. D., Ohno, H. & Hattori, M., 2012 Jan 1, In : Gut Microbes. 3, 5

Research output: Contribution to journalArticle

Bifidobacterium
Acetates
Carbohydrates
Infection
Microbial Interactions
68 Citations (Scopus)

A deeply branching thermophilic bacterium with an ancient Acetyl-CoA pathway dominates a subsurface ecosystem

Takami, H., Noguchi, H., Takaki, Y., Uchiyama, I., Toyoda, A., Nishi, S., Chee, G. J., Arai, W., Nunoura, T., Itoh, T., Hattori, M. & Takai, K., 2012 Jan 27, In : PLoS One. 7, 1, e30559.

Research output: Contribution to journalArticle

thermophilic bacteria
Acetyl Coenzyme A
Multigene Family
Ecosystems
Ecosystem
72 Citations (Scopus)

Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd 1

Hira, D., Toh, H., Migita, C. T., Okubo, H., Nishiyama, T., Hattori, M., Furukawa, K. & Fujii, T., 2012 Jun 4, In : FEBS Letters. 586, 11, p. 1658-1663 6 p.

Research output: Contribution to journalArticle

copper-containing nitrite reductase
Nitrite Reductases
Ammonium Compounds
Denitrification
Nitrites
39 Citations (Scopus)

Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of theileria-induced leukocyte transformation

Hayashida, K., Hara, Y., Abe, T., Chisato Yamasaki, C. Y., Toyoda, A., Kosuge, T., Suzuki, Y., Sato, Y., Kawashima, S., Katayama, T., Wakaguri, H., Noboru Inoue, N. I., Keiichi Homma, K. H., Tada-Umezaki, M., Yagi, Y., Yasuyuki Fujii, Y. F., Takuya Habara, T. H., Kanehisa, M., Hidemi Watanabe, H. W., Ito, K. & 10 others, Gojobori, T., Hideaki Sugawara, H. S., Imanishi, T., Weir, W., Gardner, M., Arnab Pain, A. P., Shiels, B., Hattori, M., Nene, V. & Sugimoto, C., 2012, In : mBio. 3, 5

Research output: Contribution to journalArticle

Theileria
Parasites
Leukocytes
Genome
Babesia bovis

Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.

Hayashida, K., Hara, Y., Abe, T., Yamasaki, C., Toyoda, A., Kosuge, T., Suzuki, Y., Sato, Y., Kawashima, S., Katayama, T., Wakaguri, H., Inoue, N., Homma, K., Tada-Umezaki, M., Yagi, Y., Fujii, Y., Habara, T., Kanehisa, M., Watanabe, H., Ito, K. & 10 others, Gojobori, T., Sugawara, H., Imanishi, T., Weir, W., Gardner, M., Pain, A., Shiels, B., Hattori, M., Nene, V. & Sugimoto, C., 2012, In : mBio. 3, 5

Research output: Contribution to journalArticle

Theileria
Parasites
Leukocytes
Genome
Babesia bovis
11 Citations (Scopus)

Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide

Takeno, A., Okamoto, A., Tori, K., Oshima, K., Hirakawa, H., Toh, H., Agata, N., Yamada, K., Ogasawara, N., Hayashi, T., Shimizu, T., Kuhara, S., Hattori, M. & Ohta, M., 2012 Sep, In : Journal of Bacteriology. 194, 17, p. 4767-4768 2 p.

Research output: Contribution to journalArticle

Emetics
Bacillus cereus
Genome
Foodborne Diseases
Multigene Family
32 Citations (Scopus)

Complete genome sequence of bradyrhizobium sp. S23321: Insights into symbiosis evolution in soil oligotrophs

Okubo, T., Tsukui, T., Maita, H., Okamoto, S., Oshima, K., Fujisawa, T., Saito, A., Futamata, H., Hattori, R., Shimomura, Y., Haruta, S., Morimoto, S., Wang, Y., Sakai, Y., Hattori, M., Aizawa, S. I., Nagashima, K. V. P., Masuda, S., Hattori, T., Yamashita, A. & 29 others, Bao, Z., Hayatsu, M., Kajiya-Kanegae, H., Yoshinaga, I., Sakamoto, K., Toyota, K., Nakao, M., Kohara, M., Anda, M., Niwa, R., Jung-Hwan, P., Sameshima-Saito, R., Tokuda, S. I., Yamamoto, S., Yamamoto, S., Yokoyama, T., Akutsu, T., Nakamura, Y., Nakahira-Yanaka, Y., Hoshino, Y. T., Hirakawa, H., Mitsui, H., Terasawa, K., Itakura, M., Sato, S., Ikeda-Ohtsubo, W., Sakakura, N., Kaminuma, E. & Minamisawa, K., 2012, In : Microbes and Environments. 27, 3, p. 306-315 10 p.

Research output: Contribution to journalArticle

Bradyrhizobium
soil formation
symbiosis
genome
genomic islands
36 Citations (Scopus)

Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of l-lactic acid

Kato, H., Shiwa, Y., Oshima, K., Machii, M., Araya-Kojima, T., Zendo, T., Shimizu-Kadota, M., Hattori, M., Sonomoto, K. & Yoshikawa, H., 2012 Apr, In : Journal of Bacteriology. 194, 8, p. 2102-2103 2 p.

Research output: Contribution to journalArticle

Lactococcus lactis
Xylose
Lactic Acid
Genome
Bacteria
20 Citations (Scopus)

Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the Island of Miyake, Japan

Fujimura, R., Sato, Y., Nishizawa, T., Oshima, K., Kim, S. W., Hattori, M., Kamijo, T. & Ohta, H., 2012 Aug, In : Journal of Bacteriology. 194, 15, p. 4122-4123 2 p.

Research output: Contribution to journalArticle

Volcanic Eruptions
Islands
Japan
Iron
Genome
13 Citations (Scopus)

Complete genome sequence of the denitrifying and N 2O-reducing bacterium Azoarcus sp. strain KH32C

Nishizawa, T., Tago, K., Oshima, K., Hattori, M., Ishii, S., Otsuka, S. & Senoo, K., 2012 Mar, In : Journal of Bacteriology. 194, 5, p. 1255 1 p.

Research output: Contribution to journalArticle

Azoarcus
Genome
Betaproteobacteria
Bacteria
Plant Genes
17 Citations (Scopus)

Complete genome sequence of the serotype k Streptococcus mutans strain LJ23

Aikawa, C., Furukawa, N., Watanabe, T., Minegishi, K., Furukawa, A., Eishi, Y., Oshima, K., Kurokawa, K., Hattori, M., Nakano, K., Maruyama, F., Nakagawa, I. & Ooshima, T., 2012 May, In : Journal of Bacteriology. 194, 10, p. 2754-2755 2 p.

Research output: Contribution to journalArticle

Streptococcus mutans
Genome
Dental Caries
Endocarditis
Mouth
19 Citations (Scopus)

Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver

Suzuki, N., Uefuji, H., Nishikawa, T., Mukai, Y., Yamashita, A., Hattori, M., Ogasawara, N., Bamba, T., Fukusaki, E. I., Kobayashi, A., Ogata, Y., Sakurai, N., Suzuki, H., Shibata, D. & Nakazawa, Y., 2012 Oct, In : Planta. 236, 5, p. 1405-1417 13 p.

Research output: Contribution to journalArticle

Eucommiaceae
Eucommia ulmoides
Expressed Sequence Tags
Rubber
expressed sequence tags
25 Citations (Scopus)

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

Yahara, K., Kawai, M., Furuta, Y., Takahashi, N., Handa, N., Tsuru, T., Oshima, K., Yoshida, M., Azuma, T., Hattori, M., Uchiyama, I. & Kobayashi, I., 2012, In : Genome Biology and Evolution. 4, 5, p. 628-640 13 p.

Research output: Contribution to journalArticle

Homologous Recombination
homologous recombination
recombination
Genetic Recombination
genome
13 Citations (Scopus)

Global gene expression analysis of gill tissues from normal and thermally selected strains of rainbow trout

Tan, E., Wongwarangkana, C., Kinoshita, S., Suzuki, Y., Oshima, K., Hattori, M., Ineno, T., Tamaki, K., Kera, A., Muto, K., Yada, T., Kitamura, S., Asakawa, S. & Watabe, S., 2012 Sep, In : Fisheries Science. 78, 5, p. 1041-1049 9 p.

Research output: Contribution to journalArticle

rainbow
gene expression
Oncorhynchus mykiss
gills
gene
46 Citations (Scopus)

Insight into the Transmission Biology and Species-Specific Functional Capabilities of Tsetse (Diptera: Glossinidae) Obligate Symbiont Wigglesworthia

Rio, R. V. M., Symula, R. E., Wang, J., Lohs, C., Wu, Y. N., Snyder, A. K., Bjornson, R. D., Oshima, K., Biehl, B. S., Perna, N. T., Hattori, M. & Aksoy, S., 2012 Jan, In : mBio. 3, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Wigglesworthia
Glossinidae
Tsetse Flies
Diptera
Genome
7 Citations (Scopus)

Revealing microbial community structures in large- and small-scale activated sludge systems by barcoded pyrosequencing of 16S rRNA gene

Ranasinghe, P. D., Satoh, H., Oshiki, M., Oshima, K., Suda, W., Hattori, M. & Mino, T., 2012, In : Water Science and Technology. 66, 10, p. 2155-2161 7 p.

Research output: Contribution to journalArticle

Wastewater treatment
activated sludge
microbial community
community structure
Genes
46 Citations (Scopus)

Tonoplast- and Plasma Membrane-Localized Aquaporin-Family Transporters in Blue Hydrangea Sepals of Aluminum Hyperaccumulating Plant

Negishi, T., Oshima, K., Hattori, M., Kanai, M., Mano, S., Nishimura, M. & Yoshida, K., 2012 Aug 29, In : PLoS One. 7, 8, e43189.

Research output: Contribution to journalArticle

Hydrangea
Aluminum plants
Aquaporins
aquaporins
tonoplast
2011
18 Citations (Scopus)

Analysis of early bacterial communities on volcanic deposits on the island of Miyake (Miyake-jima), Japan: A 6-year study at a fixed site

Fujimura, R., Sato, Y., Nishizawa, T., Nanba, K., Oshima, K., Hattori, M., Kamijo, T. & Ohta, H., 2011, In : Microbes and Environments. 27, 1, p. 19-29 11 p.

Research output: Contribution to journalArticle

Acidithiobacillus ferrooxidans
bacterial communities
ribosomal RNA
Japan
Leptospirillum
873 Citations (Scopus)

Bifidobacteria can protect from enteropathogenic infection through production of acetate

Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J. M., Topping, D. L., Suzuki, T., Taylor, T. D., Itoh, K., Kikuchi, J., Morita, H., Hattori, M. & Ohno, H., 2011 Jan 27, In : Nature. 469, 7331, p. 543-549 7 p.

Research output: Contribution to journalArticle

Bifidobacterium
Escherichia coli O157
Acetates
Infection
Shiga Toxin
20 Citations (Scopus)

Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces

Morita, H., Nakano, A., Onoda, H., Toh, H., Oshima, K., Takami, H., Murakami, M., Fukuda, S., Takizawa, T., Kuwahara, T., Ohno, H., Tanabe, S. & Hattori, M., 2011 Nov, In : International Journal of Systematic and Evolutionary Microbiology. 61, 11, p. 2610-2615 6 p.

Research output: Contribution to journalArticle

Bifidobacterium
infants
Feces
feces
DNA
44 Citations (Scopus)

Birth and death of genes linked to chromosomal inversion

Furuta, Y., Kawai, M., Yahara, K., Takahashi, N., Handa, N., Tsuru, T., Oshima, K., Yoshida, M., Azuma, T., Hattori, M., Uchiyama, I. & Kobayashi, I., 2011 Jan 25, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 4, p. 1501-1506 6 p.

Research output: Contribution to journalArticle

Parturition
Genome
Genes
Genetic Recombination
DNA
47 Citations (Scopus)

Complete genome sequence and comparative analysis of the fish pathogen lactococcus garvieae

Morita, H., Toh, H., Oshima, K., Yoshizaki, M., Kawanishi, M., Nakaya, K., Suzuki, T., Miyauchi, E., Ishii, Y., Tanabe, S., Murakami, M. & Hattori, M., 2011, In : PLoS One. 6, 8, e23184.

Research output: Contribution to journalArticle

Lactococcus
Lactococcus garvieae
Pathogens
Multigene Family
multigene family
33 Citations (Scopus)

Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, Which causes periodontal disease

Watanabe, T., Maruyama, F., Nozawa, T., Aoki, A., Okano, S., Shibata, Y., Oshima, K., Kurokawa, K., Hattori, M., Nakagawa, I. & Abiko, Y., 2011 Aug, In : Journal of Bacteriology. 193, 16, p. 4259-4260 2 p.

Research output: Contribution to journalArticle

Porphyromonas gingivalis
Periodontal Diseases
Genome
Bacteria
Periodontitis
9 Citations (Scopus)

Complete Genome Sequence of the Denitrifying and N 2O-Reducing Bacterium Pseudogulbenkiania sp. Strain NH8B

Ishii, S., Tago, K., Nishizawa, T., Oshima, K., Hattori, M. & Senoo, K., 2011 Nov, In : Journal of Bacteriology. 193, 22, p. 6395-6396 2 p.

Research output: Contribution to journalArticle

Denitrification
Genome
Bacteria
29 Citations (Scopus)

Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. Strain L, both isolated from a microbial fuel cell

Toh, H., Sharma, V. K., Oshima, K., Kondo, S., Hattori, M., Ward, F. B., Free, A. & Taylor, T. D., 2011 Nov, In : Journal of Bacteriology. 193, 22, p. 6411-6412 2 p.

Research output: Contribution to journalArticle

Arcobacter
Bioelectric Energy Sources
Epsilonproteobacteria
Genome
Biofilms
75 Citations (Scopus)

Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of Th17 cell differentiation

Prakash, T., Oshima, K., Morita, H., Fukuda, S., Imaoka, A., Kumar, N., Sharma, V. K., Kim, S. W., Takahashi, M., Saitou, N., Taylor, T. D., Ohno, H., Umesaki, Y. & Hattori, M., 2011 Sep 15, In : Cell Host and Microbe. 10, 3, p. 273-284 12 p.

Research output: Contribution to journalArticle

Th17 Cells
Helper-Inducer T-Lymphocytes
Cell Differentiation
Genome
Bacteria
22 Citations (Scopus)

Complete genomic sequence of the equol-producing bacterium Eggerthella sp. Strain YY7918, isolated from adult human intestine

Yokoyama, S. I., Oshima, K., Nomura, I., Hattori, M. & Suzuki, T., 2011 Oct, In : Journal of Bacteriology. 193, 19, p. 5570-5571 2 p.

Research output: Contribution to journalArticle

Equol
Intestines
Bacteria
Soybeans
daidzein
7 Citations (Scopus)

Complete genomic sequence of the O-desmethylangolensin-producing bacterium Clostridium rRNA cluster XIVa strain SY8519, isolated from adult human intestine

Yokoyama, S. I., Oshima, K., Nomura, I., Hattori, M. & Suzuki, T., 2011 Oct, In : Journal of Bacteriology. 193, 19, p. 5568-5569 2 p.

Research output: Contribution to journalArticle

Clostridium
Intestines
Bacteria
Gastrointestinal Microbiome
O-desmethylangolensin
41 Citations (Scopus)

Draft genome sequencing and comparative analysis of aspergillus sojae NBRC4239

Sato, A., Oshima, K., Noguchi, H., Ogawa, M., Takahashi, T., Oguma, T., Koyama, Y., Itoh, T., Hattori, M. & Hanya, Y., 2011 Jun, In : DNA Research. 18, 3, p. 165-176 12 p.

Research output: Contribution to journalArticle

Aspergillus
Genome
Genes
Fungi
Soy Foods
2706 Citations (Scopus)

Enterotypes of the human gut microbiome

Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K. & 22 others, Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., De Vos, W. M., Brunak, S., Doré, J., Weissenbach, J., Ehrlich, S. D. & Bork, P., 2011 May 12, In : Nature. 473, 7346, p. 174-180 7 p.

Research output: Contribution to journalArticle

digestive system
body mass index
intestinal microorganisms
microbial communities
species diversity
11 Citations (Scopus)

Erratum: Enterotypes of the human gut microbiome (Nature (2011) 473 (174-180))

Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K. & 23 others, Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Junwang, Guarner, F., Pedersen, O., De Vos, W. M., Brunak, S. R., Dora, J., Consortium, M., Weissenbach, J., Ehrlich, S. D. & Bork, P., 2011 Jun 30, In : Nature. 474, 7353, p. 666 1 p.

Research output: Contribution to journalArticle

Microbiota
Gastrointestinal Microbiome
96 Citations (Scopus)

Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes

Kawai, M., Furuta, Y., Yahara, K., Tsuru, T., Oshima, K., Handa, N., Takahashi, N., Yoshida, M., Azuma, T., Hattori, M., Uchiyama, I. & Kobayashi, I., 2011, In : BMC Microbiology. 11, 104.

Research output: Contribution to journalArticle

Helicobacter pylori
Genome
Membrane Proteins
peptide deformylase
Electrons
35 Citations (Scopus)

Genome-wide profiling of DNA methylation in human cancer cells

Ogoshi, K., Hashimoto, S. I., Nakatani, Y., Qu, W., Oshima, K., Tokunaga, K., Sugano, S., Hattori, M., Morishita, S. & Matsushima, K., 2011 Oct, In : Genomics. 98, 4, p. 280-287 8 p.

Research output: Contribution to journalArticle

DNA Methylation
Methylation
Genome
Neoplasms
CpG Islands
180 Citations (Scopus)

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

Nunoura, T., Takaki, Y., Kakuta, J., Nishi, S., Sugahara, J., Kazama, H., Chee, G. J., Hattori, M., Kanai, A., Atomi, H., Takai, K. & Takami, H., 2011 Apr, In : Nucleic Acids Research. 39, 8, p. 3204-3223 20 p.

Research output: Contribution to journalArticle

Crenarchaeota
Korarchaeota
Archaea
Euryarchaeota
Metagenomics
62 Citations (Scopus)

Reductive evolution of bacterial genome in insect gut environment

Nikoh, N., Hosokawa, T., Oshima, K., Hattori, M. & Fukatsu, T., 2011, In : Genome Biology and Evolution. 3, 1, p. 702-714 13 p.

Research output: Contribution to journalArticle

Bacterial Genomes
Buchnera
Buchnera (Proteobacteria)
Insects
Wigglesworthia
20 Citations (Scopus)

The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions

Ikeda, S., Okubo, T., Takeda, N., Banba, M., Sasaki, K., Imaizumi-Anraku, H., Fujihara, S., Ohwaki, Y., Ohshima, K., Fukuta, Y., Eda, S., Mitsui, H., Hattori, M., Sato, T., Shinano, T. & Minamisawa, K., 2011 Jul, In : Applied and Environmental Microbiology. 77, 13, p. 4399-4405 7 p.

Research output: Contribution to journalArticle

Bacterial Genes
Calcium-Calmodulin-Dependent Protein Kinases
bacterial communities
paddies
highlands