If you made any changes in Pure these will be visible here soon.

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

  • 2 Similar Profiles
RNA Engineering & Materials Science
Long Noncoding RNA Medicine & Life Sciences
Untranslated RNA Medicine & Life Sciences
Computational Biology Medicine & Life Sciences
Base Pairing Medicine & Life Sciences
Sequence Alignment Medicine & Life Sciences
Genome Medicine & Life Sciences
Bioinformatics Chemical Compounds

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Research Output 2003 2018

  • 961 Citations
  • 14 h-Index
  • 50 Article
  • 2 Chapter
  • 2 Conference contribution
  • 1 Comment/debate

A Novel Method for Assessing the Statistical Significance of RNA-RNA Interactions Between Two Long RNAs

Fukunaga, T. & Hamada, M., 2018 Sep 1, In : Journal of Computational Biology. 25, 9, p. 976-986 11 p.

Research output: Contribution to journalArticle

Statistical Significance
5' Untranslated Regions
3' Untranslated Regions

Beyond similarity assessment: Selecting the optimal model for sequence alignment via the Factorized Asymptotic Bayesian algorithm

Takeda, T. & Hamada, M., 2018 Feb 15, In : Bioinformatics. 34, 4, p. 576-584 9 p.

Research output: Contribution to journalArticle

Sequence Alignment
Markov Model
Hidden Markov models
Statistical Models
Computational Biology
1 Citation (Scopus)

DeepM6ASeq: Prediction and characterization of m6A-containing sequences using deep learning

Zhang, Y. & Hamada, M., 2018 Dec 31, In : BMC Bioinformatics. 19, 524.

Research output: Contribution to journalArticle


Estimating energy parameters for RNA secondary structure predictions using both experimental and computational data

Nishida, S., Sakuraba, S., Asai, K. & Hamada, M., 2018 Mar 9, (Accepted/In press) In : IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Research output: Contribution to journalArticle

RNA Secondary Structure
Structure Prediction
Free energy
4 Citations (Scopus)

Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data

Zeng, C., Fukunaga, T. & Hamada, M., 2018 May 29, In : BMC Genomics. 19, 1, 414.

Research output: Contribution to journalArticle

Long Noncoding RNA