• 7919 Citations
  • 49 h-Index
1991 …2020

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Article
2014

Modeling of stem cell dynamics in human colonic crypts in silico

Kagawa, Y., Horita, N., Taniguchi, H. & Tsuneda, S., 2014 Feb 1, In : Journal of Gastroenterology. 49, 2, p. 263-269 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

PBDE: Structure-activity studies for the inhibition of hepatitis c virus ns3 helicase

Salam, K. A., Furuta, A., Noda, N., Tsuneda, S., Sekiguchi, Y., Yamashita, A., Moriishi, K., Nakakoshi, M., Tani, H., Roy, S. R., Tanaka, J., Tsubuki, M. & Akimitsu, N., 2014 Apr, In : Molecules. 19, 4, p. 4006-4020 15 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Phosphorylated gelatin to enhance cell adhesion to titanium

Park, S. H., Zhu, L., Tada, S., Obuse, S., Yoshida, Y., Nakamura, M., Son, T. I., Tsuneda, S. & Ito, Y., 2014 Sep, In : Polymer International. 63, 9, p. 1616-1619 4 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2013

Complete autotrophic denitrification in a single reactor using nitritation and anammox gel carriers

Isaka, K., Kimura, Y., Yamamoto, T., Osaka, T. & Tsuneda, S., 2013 Nov, In : Bioresource Technology. 147, p. 96-101 6 p.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Isolation of Nitrospira belonging to sublineage II from a wastewater treatment plant

Ushiki, N., Fujitani, H., Aoi, Y. & Tsuneda, S., 2013 Sep 26, In : Microbes and Environments. 28, 3, p. 346-353 8 p.

Research output: Contribution to journalArticle

41 Citations (Scopus)

Psammaplin A inhibits hepatitis C virus NS3 helicase

Salam, K. A., Furuta, A., Noda, N., Tsuneda, S., Sekiguchi, Y., Yamashita, A., Moriishi, K., Nakakoshi, M., Tsubuki, M., Tani, H., Tanaka, J. & Akimitsu, N., 2013 Oct 1, In : Journal of Natural Medicines. 67, 4, p. 765-772 8 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Selective enrichment of two different types of Nitrospira-like nitrite-oxidizing bacteria from a wastewater treatment plant

Fujitani, H., Aoi, Y. & Tsuneda, S., 2013 Jun 1, In : Microbes and Environments. 28, 2, p. 236-243 8 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2012

Detection of pre-mRNA splicing in vitro by an RNA-templated fluorogenic reaction

Tamura, Y., Furukawa, K., Yoshimoto, R., Kawai, Y., Yoshida, M., Tsuneda, S., Ito, Y. & Abe, H., 2012 Dec 1, In : Bioorganic and Medicinal Chemistry Letters. 22, 23, p. 7248-7251 4 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

High-rate denitrification using polyethylene glycol gel carriers entrapping heterotrophic denitrifying bacteria

Isaka, K., Kimura, Y., Osaka, T. & Tsuneda, S., 2012 Oct 15, In : Water Research. 46, 16, p. 4941-4948 8 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Inhibition of Both Protease and Helicase Activities of Hepatitis C Virus NS3 by an Ethyl Acetate Extract of Marine Sponge Amphimedon sp

Fujimoto, Y., Salam, K. A., Furuta, A., Matsuda, Y., Fujita, O., Tani, H., Ikeda, M., Kato, N., Sakamoto, N., Maekawa, S., Enomoto, N., de Voogd, N. J., Nakakoshi, M., Tsubuki, M., Sekiguchi, Y., Tsuneda, S., Akimitsu, N., Noda, N., Yamashita, A., Tanaka, J. & 1 others, Moriishi, K., 2012 Nov 7, In : PloS one. 7, 11, e48685.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Inhibition of hepatitis C virus NS3 helicase by manoalide

Salam, K. A., Furuta, A., Noda, N., Tsuneda, S., Sekiguchi, Y., Yamashita, A., Moriishi, K., Nakakoshi, M., Tsubuki, M., Tani, H., Tanaka, J. & Akimitsu, N., 2012 Apr 27, In : Journal of Natural Products. 75, 4, p. 650-654 5 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Inhibition of hepatitis C virus replication and viral helicase by ethyl acetate extract of the marine feather star Alloeocomatella polycladia

Yamashita, A., Salam, K. A., Furuta, A., Matsuda, Y., Fujita, O., Tani, H., Fujita, Y., Fujimoto, Y., Ikeda, M., Kato, N., Sakamoto, N., Maekawa, S., Enomoto, N., Nakakoshi, M., Tsubuki, M., Sekiguchi, Y., Tsuneda, S., Akimitsu, N., Noda, N., Tanaka, J. & 1 others, Moriishi, K., 2012 Apr, In : Marine Drugs. 10, 4, p. 744-761 18 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Quantitative detection of Cryptosporidium oocyst in water source based on 18S rRNA by alternately binding probe competitive reverse transcription polymerase chain reaction (ABC-RT-PCR)

Kishida, N., Miyata, R., Furuta, A., Izumiyama, S., Tsuneda, S., Sekiguchi, Y., Noda, N. & Akiba, M., 2012 Jan 1, In : Water Research. 46, 1, p. 187-194 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Rapid start-up of a nitrifying reactor using aerobic granular sludge as seed sludge

Kishida, N., Saeki, G., Tsuneda, S. & Sudo, R., 2012 Feb 1, In : Water Science and Technology. 65, 3, p. 581-588 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Temperature dependence for anammox bacteria enriched from freshwater sediments

Osaka, T., Kimura, Y., Otsubo, Y., Suwa, Y., Tsuneda, S. & Isaka, K., 2012 Oct 1, In : Journal of Bioscience and Bioengineering. 114, 4, p. 429-434 6 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

The effect of surface charge property on Escherichia coli initial adhesion and subsequent biofilm formation

Terada, A., Okuyama, K., Nishikawa, M., Tsuneda, S. & Hosomi, M., 2012 Jul 1, In : Biotechnology and bioengineering. 109, 7, p. 1745-1754 10 p.

Research output: Contribution to journalArticle

56 Citations (Scopus)
2011

Alternately binding probe competitive PCR as a simple, cost-effective, and accurate quantification method for JAK2V617F allele burden in myeloproliferative neoplasms

Morishita, S., Komatsu, N., Kirito, K., Koda, A. H., Sekiguchi, Y., Tsuneda, S. & Noda, N., 2011 Dec 1, In : Leukemia Research. 35, 12, p. 1632-1636 5 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Application of nitrifying granules to improvement of nitrification activity in activated sludge process

Kishida, N., Totsuka, R., Kono, A., Kurasawa, M., Ogiwara, M. & Tsuneda, S., 2011, In : International Journal of Environment and Waste Management. 7, 1-2, p. 103-111 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Development of osteogenic cell sheets for bone tissue engineering applications

Pirraco, R. P., Obokata, H., Iwata, T., Marques, A. P., Tsuneda, S., Yamato, M., Reis, R. L. & Okano, T., 2011 Jun 1, In : Tissue Engineering - Part A. 17, 11-12, p. 1507-1515 9 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Fluorescence detection of intron lariat RNA with reduction-triggered fluorescent probes

Furukawa, K., Abe, H., Tamura, Y., Yoshimoto, R., Yoshida, M., Tsuneda, S. & Ito, Y., 2011 Dec 9, In : Angewandte Chemie - International Edition. 50, 50, p. 12020-12023 4 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Reproducible subcutaneous transplantation of cell sheets into recipient mice

Obokata, H., Yamato, M., Tsuneda, S. & Okano, T., 2011 Jun 1, In : Nature protocols. 6, 7, p. 1053-1059 7 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Synthesis, structure, and biological activity of dumbbell-shaped nanocircular RNAs for RNA interference

Abe, N., Abe, H., Nagai, C., Harada, M., Hatakeyama, H., Harashima, H., Ohshiro, T., Nishihara, M., Furukawa, K., Maeda, M., Tsuneda, S. & Ito, Y., 2011 Oct 19, In : Bioconjugate Chemistry. 22, 10, p. 2082-2092 11 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

The potential of stem cells in adult tissues representative of the three germ layers

Obokata, H., Kojima, K., Westerman, K., Yamato, M., Okano, T., Tsuneda, S. & Vacanti, C. A., 2011 Mar 1, In : Tissue Engineering - Part A. 17, 5-6, p. 607-615 9 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2010

Behavior of polymeric substrates in an aerobic granular sludge system

de Kreuk, M. K., Kishida, N., Tsuneda, S. & van Loosdrecht, M. C. M., 2010 Dec, In : Water Research. 44, 20, p. 5929-5938 10 p.

Research output: Contribution to journalArticle

92 Citations (Scopus)

Direct cloning and expression of putative esterase genes from environmental DNA

Terahara, T., Yamada, K., Kurata, S., Yokomaku, T., Tsuneda, S. & Harayama, S., 2010 Jul 1, In : Enzyme and Microbial Technology. 47, 1-2, p. 17-23 7 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Microbial community structure in autotrophic nitrifying granules characterized by experimental and simulation analyses

Matsumoto, S., Katoku, M., Saeki, G., Terada, A., Aoi, Y., Tsuneda, S., Picioreanu, C. & Van Loosdrecht, M. C. M., 2010 Jan 1, In : Environmental Microbiology. 12, 1, p. 192-206 15 p.

Research output: Contribution to journalArticle

93 Citations (Scopus)

Microbial population dynamics and community structure during the formation of nitrifying granules to treat ammonia-rich inorganic wastewater

Matsumoto, S., Ishikawa, D., Saeki, G., Aoi, Y. & Tsuneda, S., 2010 Sep 30, In : Microbes and Environments. 25, 3, p. 164-170 7 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

New monitoring approach for metabolic dynamics in microbial ecosystems using stable-isotope-labeling technologies

Date, Y., Nakanishi, Y., Fukuda, S., Kato, T., Tsuneda, S., Ohno, H. & Kikuchi, J., 2010 Jul 1, In : Journal of Bioscience and Bioengineering. 110, 1, p. 87-93 7 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Photoactivatable fluorescein derivatives with azidomethyl caging groups for tracing oligonucleotides in living human cells

Furukawa, K., Abe, H., Tsuneda, S. & Ito, Y., 2010 May 21, In : Organic and Biomolecular Chemistry. 8, 10, p. 2309-2311 3 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Quantitative detection of chloroethene-reductive bacteria Dehalococcoides spp. using alternately binding probe competitive polymerase chain reaction

Miyata, R., Adachi, K., Tani, H., Kurata, S., Nakamura, K., Tsuneda, S., Sekiguchi, Y. & Noda, N., 2010 Jun 1, In : Molecular and Cellular Probes. 24, 3, p. 131-137 7 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Real-time monitoring of RNA helicase activity using fluorescence resonance energy transfer in vitro

Tani, H., Fujita, O., Furuta, A., Matsuda, Y., Miyata, R., Akimitsu, N., Tanaka, J., Tsuneda, S., Sekiguchi, Y. & Noda, N., 2010 Feb 26, In : Biochemical and Biophysical Research Communications. 393, 1, p. 131-136 6 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Transitions in oral and intestinal microflora composition and innate immune receptor-dependent stimulation during mouse development

Hasegawa, M., Osaka, T., Tawaratsumida, K., Yamazaki, T., Tada, H., Chen, G. Y., Tsuneda, S., Núñez, G. & Inohara, N., 2010 Feb 1, In : Infection and Immunity. 78, 2, p. 639-650 12 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2009

Affinity capillary electrophoresis with magnetic beads for multiplex quantitative analysis of bacterial 16S rRNA

Adachi, K., Yamaguchi, M., Nakashige, M., Kanagawa, T., Torimura, M., Tsuneda, S., Sekiguchi, Y. & Noda, N., 2009 Jun 1, In : Journal of Bioscience and Bioengineering. 107, 6, p. 662-667 6 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Fibrous support stabilizes nitrification performance of a membrane-aerated biofilm: The effect of liquid flow perturbation

Terada, A., Ito, J., Matsumoto, S. & Tsuneda, S., 2009 Aug 20, In : JOURNAL OF CHEMICAL ENGINEERING OF JAPAN. 42, 8, p. 607-615 9 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

High-throughput screening assay of hepatitis C virus helicase inhibitors using fluorescence-quenching phenomenon

Tani, H., Akimitsu, N., Fujita, O., Matsuda, Y., Miyata, R., Tsuneda, S., Igarashi, M., Sekiguchi, Y. & Noda, N., 2009 Feb 20, In : Biochemical and Biophysical Research Communications. 379, 4, p. 1054-1059 6 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Hollow-fiber membrane chamber as a device for in situ environmental cultivation

Aoi, Y., Kinoshita, T., Hata, T., Ohta, H., Obokata, H. & Tsuneda, S., 2009 Jun, In : Applied and Environmental Microbiology. 75, 11, p. 3826-3833 8 p.

Research output: Contribution to journalArticle

57 Citations (Scopus)

Microbial diversity of anammox bacteria enriched from different types of seed sludge in an anaerobic continuous-feeding cultivation reactor

Date, Y., Isaka, K., Ikuta, H., Sumino, T., Kaneko, N., Yoshie, S., Tsuneda, S. & Inamori, Y., 2009 Mar 1, In : Journal of Bioscience and Bioengineering. 107, 3, p. 281-286 6 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Molecular diversity of bacterial chitinases in arable soils and the effects of environmental factors on the chitinolytic bacterial community

Terahara, T., Ikeda, S., Noritake, C., Minamisawa, K., Ando, K., Tsuneda, S. & Harayama, S., 2009 Mar 1, In : Soil Biology and Biochemistry. 41, 3, p. 473-480 8 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Protein detection using oligonucleotide probes.

Shibata, A., Abe, H., Furukawa, K., Tsuneda, S. & Ito, Y., 2009, In : Nucleic acids symposium series (2004). 53, p. 157-158 2 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Real-time reverse transcription loop-mediated isothermal amplification for rapid and simple quantification of WT1 mRNA

Morishita, S., Tani, H., Kurata, S., Nakamura, K., Tsuneda, S., Sekiguchi, Y. & Noda, N., 2009 Apr 1, In : Clinical Biochemistry. 42, 6, p. 515-520 6 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Reduction-triggered fluorescence probe for peptide-templated reactions

Shibata, A., Abe, H., Furukawa, K., Tsuneda, S. & Ito, Y., 2009 Nov 1, In : Chemical and Pharmaceutical Bulletin. 57, 11, p. 1223-1226 4 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells

Furukawa, K., Abe, H., Hibino, K., Sako, Y., Tsuneda, S. & Ito, Y., 2009 May 20, In : Bioconjugate Chemistry. 20, 5, p. 1026-1036 11 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)

Reduction-triggered red fluorescent probes for dual-color detection of oligonucleotide sequences

Furukawa, K., Abe, H., Wang, J., Uda, M., Koshino, H., Tsuneda, S. & Ito, Y., 2009 Feb 16, In : Organic and Biomolecular Chemistry. 7, 4, p. 671-677 7 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Simultaneous nitrogen and phosphorus removal from high-strength industrial wastewater using aerobic granular sludge

Kishida, N., Tsuneda, S., Kim, J. H. & Sudo, R., 2009 Feb 24, In : Journal of Environmental Engineering. 135, 3, p. 153-158 6 p.

Research output: Contribution to journalArticle

41 Citations (Scopus)

Synthetic nanocircular RNA for controlling of gene expression.

Abe, H., Abe, N., Uda, M., Tsuneda, S. & Ito, Y., 2009, In : Nucleic acids symposium series (2004). 53, p. 65-66 2 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Universal quenching probe system: Flexible, specific, and cost-effective real-time polymerase chain reaction method

Tani, H., Miyata, R., Ichikawa, K., Morishita, S., Kurata, S., Nakamura, K., Tsuneda, S., Sekiguchi, Y. & Noda, N., 2009 Jul 15, In : Analytical chemistry. 81, 14, p. 5678-5685 8 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)
2008

Anaerobic ammonium oxidation (anammox) irreversibly inhibited by methanol

Isaka, K., Suwa, Y., Kimura, Y., Yamagishi, T., Sumino, T. & Tsuneda, S., 2008 Nov 1, In : Applied Microbiology and Biotechnology. 81, 2, p. 379-385 7 p.

Research output: Contribution to journalArticle

58 Citations (Scopus)

A reduction-triggered fluorescence probe for sensing nucleic acids

Abe, H., Wang, J., Furukawa, K., Oki, K., Uda, M., Tsuneda, S. & Ito, Y., 2008 Jun 1, In : Bioconjugate Chemistry. 19, 6, p. 1219-1226 8 p.

Research output: Contribution to journalArticle

81 Citations (Scopus)

DNA microarray mediated transcriptional profiling of Nitrosomonas europaea in response to linear alkylbenzene sulfonates

Urakawa, H., Matsumoto, J., Inaba, K. & Tsuneda, S., 2008 May 1, In : FEMS Microbiology Letters. 282, 2, p. 166-173 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Effects of carbon source on denitrification efficiency and microbial community structure in a saline wastewater treatment process

Osaka, T., Shirotani, K., Yoshie, S. & Tsuneda, S., 2008 Aug, In : Water Research. 42, 14, p. 3709-3718 10 p.

Research output: Contribution to journalArticle

108 Citations (Scopus)