A gain scheduling model of temperature compensation for circadian rhythm of cyanobacteria

Miki Shimada; Kenko Uchida

doi:10.1109/ASCC.2013.6606018

A gain scheduling model of temperature compensation for circadian rhythm of cyanobacteria

Miki Shimada, Kenko Uchida

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

The KaiC phosphorylation cycle generates the cir-cadian rhythm without the transcription and translation of kai genes. To study the mechanism of the circadian rhythm, we use the model proposed by Kurosawa et al, describing the KaiC phosphorylation process in DD case. The temperature compensation is one of the most important features of the circadian rhythm. Therefore, some methods used to construct the temperature compensated model, have been proposed. In this paper, we applied the gain scheduling method proposed by Takeuchi to the model. In which, we focused on another essential feature named 'temperature entrainment'. This study investigates the mechanism of the phase shift and the temperature entrainment by using the temperature compensated model under the temperature cycle. Simulations results, including the comparison with the biological experiments, clearly illustrate the effectiveness of the proposed model.

Original language	English
Title of host publication	2013 9th Asian Control Conference, ASCC 2013
DOIs	https://doi.org/10.1109/ASCC.2013.6606018
Publication status	Published - 2013
Event	2013 9th Asian Control Conference, ASCC 2013 - Istanbul Duration: 2013 Jun 23 → 2013 Jun 26

Other

Other	2013 9th Asian Control Conference, ASCC 2013
City	Istanbul
Period	13/6/23 → 13/6/26

Keywords

circadian rhythm
gain scheduling
temperature compensation
temperature entrainment

ASJC Scopus subject areas

Control and Systems Engineering

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10.1109/ASCC.2013.6606018

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title = "A gain scheduling model of temperature compensation for circadian rhythm of cyanobacteria",

abstract = "The KaiC phosphorylation cycle generates the cir-cadian rhythm without the transcription and translation of kai genes. To study the mechanism of the circadian rhythm, we use the model proposed by Kurosawa et al, describing the KaiC phosphorylation process in DD case. The temperature compensation is one of the most important features of the circadian rhythm. Therefore, some methods used to construct the temperature compensated model, have been proposed. In this paper, we applied the gain scheduling method proposed by Takeuchi to the model. In which, we focused on another essential feature named 'temperature entrainment'. This study investigates the mechanism of the phase shift and the temperature entrainment by using the temperature compensated model under the temperature cycle. Simulations results, including the comparison with the biological experiments, clearly illustrate the effectiveness of the proposed model.",

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AU - Shimada, Miki

AU - Uchida, Kenko

PY - 2013

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N2 - The KaiC phosphorylation cycle generates the cir-cadian rhythm without the transcription and translation of kai genes. To study the mechanism of the circadian rhythm, we use the model proposed by Kurosawa et al, describing the KaiC phosphorylation process in DD case. The temperature compensation is one of the most important features of the circadian rhythm. Therefore, some methods used to construct the temperature compensated model, have been proposed. In this paper, we applied the gain scheduling method proposed by Takeuchi to the model. In which, we focused on another essential feature named 'temperature entrainment'. This study investigates the mechanism of the phase shift and the temperature entrainment by using the temperature compensated model under the temperature cycle. Simulations results, including the comparison with the biological experiments, clearly illustrate the effectiveness of the proposed model.

AB - The KaiC phosphorylation cycle generates the cir-cadian rhythm without the transcription and translation of kai genes. To study the mechanism of the circadian rhythm, we use the model proposed by Kurosawa et al, describing the KaiC phosphorylation process in DD case. The temperature compensation is one of the most important features of the circadian rhythm. Therefore, some methods used to construct the temperature compensated model, have been proposed. In this paper, we applied the gain scheduling method proposed by Takeuchi to the model. In which, we focused on another essential feature named 'temperature entrainment'. This study investigates the mechanism of the phase shift and the temperature entrainment by using the temperature compensated model under the temperature cycle. Simulations results, including the comparison with the biological experiments, clearly illustrate the effectiveness of the proposed model.

KW - circadian rhythm

KW - gain scheduling

KW - temperature compensation

KW - temperature entrainment

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DO - 10.1109/ASCC.2013.6606018

M3 - Conference contribution

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BT - 2013 9th Asian Control Conference, ASCC 2013

T2 - 2013 9th Asian Control Conference, ASCC 2013

Y2 - 23 June 2013 through 26 June 2013

ER -

A gain scheduling model of temperature compensation for circadian rhythm of cyanobacteria

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Keywords

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