A genome-wide and nonredundant mouse transcription factor database

Mutsumi Kanamori, Hideaki Konno, Naoki Osato, Jun Kawai, Yoshihide Hayashizaki, Harukazu Suzuki

Research output: Contribution to journalArticlepeer-review

85 Citations (Scopus)

Abstract

Here we describe the development of a genome-wide and nonredundant mouse transcription factor database and its viewer (http://genome.gsc.riken.jp/TFdb/). We systematically selected transcription factors with DNA-binding properties and their regulators on the basis of their LocusLink and Gene Ontology annotations. We also incorporated into our database information regarding the corresponding available cDNA clones and their structural properties. Because of these features, our database is unique and may provide useful information for systematic genome-wide studies of transcriptional regulation.

Original languageEnglish
Pages (from-to)787-793
Number of pages7
JournalBiochemical and Biophysical Research Communications
Volume322
Issue number3
DOIs
Publication statusPublished - 2004 Sep 24
Externally publishedYes

Keywords

  • Annotation
  • Database
  • Gene Ontology
  • LocusLink
  • Mouse
  • Transcription factor
  • cDNA clones

ASJC Scopus subject areas

  • Biophysics
  • Biochemistry
  • Molecular Biology
  • Cell Biology

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