A prospective compound screening contest identified broader inhibitors for Sirtuin 1

Shuntaro Chiba; Masahito Ohue; Anastasiia Gryniukova; Petro Borysko; Sergey Zozulya; Nobuaki Yasuo; Ryunosuke Yoshino; Kazuyoshi Ikeda; Woong Hee Shin; Daisuke Kihara; Mitsuo Iwadate; Hideaki Umeyama; Takaaki Ichikawa; Reiji Teramoto; Kun Yi Hsin; Vipul Gupta; Hiroaki Kitano; Mika Sakamoto; Akiko Higuchi; Nobuaki Miura; Kei Yura; Masahiro Mochizuki; Chandrasekaran Ramakrishnan; A. Mary Thangakani; D. Velmurugan; M. Michael Gromiha; Itsuo Nakane; Nanako Uchida; Hayase Hakariya; Modong Tan; Hironori K. Nakamura; Shogo D. Suzuki; Tomoki Ito; Masahiro Kawatani; Kentaroh Kudoh; Sakurako Takashina; Kazuki Z. Yamamoto; Yoshitaka Moriwaki; Keita Oda; Daisuke Kobayashi; Tatsuya Okuno; Shintaro Minami; George Chikenji; Philip Prathipati; Chioko Nagao; Attayeb Mohsen; Mari Ito; Kenji Mizuguchi; Teruki Honma; Takashi Ishida; Takatsugu Hirokawa; Yutaka Akiyama; Masakazu Sekijima

doi:10.1038/s41598-019-55069-y

A prospective compound screening contest identified broader inhibitors for Sirtuin 1

Shuntaro Chiba, Masahito Ohue, Anastasiia Gryniukova, Petro Borysko, Sergey Zozulya, Nobuaki Yasuo, Ryunosuke Yoshino, Kazuyoshi Ikeda, Woong Hee Shin, Daisuke Kihara, Mitsuo Iwadate, Hideaki Umeyama, Takaaki Ichikawa, Reiji Teramoto, Kun Yi Hsin, Vipul Gupta, Hiroaki Kitano, Mika Sakamoto, Akiko Higuchi, Nobuaki MiuraKei Yura, Masahiro Mochizuki, Chandrasekaran Ramakrishnan, A. Mary Thangakani, D. Velmurugan, M. Michael Gromiha, Itsuo Nakane, Nanako Uchida, Hayase Hakariya, Modong Tan, Hironori K. Nakamura, Shogo D. Suzuki, Tomoki Ito, Masahiro Kawatani, Kentaroh Kudoh, Sakurako Takashina, Kazuki Z. Yamamoto, Yoshitaka Moriwaki, Keita Oda, Daisuke Kobayashi, Tatsuya Okuno, Shintaro Minami, George Chikenji, Philip Prathipati, Chioko Nagao, Attayeb Mohsen, Mari Ito, Kenji Mizuguchi, Teruki Honma, Takashi Ishida, Takatsugu Hirokawa, Yutaka Akiyama, Masakazu Sekijima

School of Advanced Science and Engineering

Research output: Contribution to journal › Article

Abstract

Potential inhibitors of a target biomolecule, NAD-dependent deacetylase Sirtuin 1, were identified by a contest-based approach, in which participants were asked to propose a prioritized list of 400 compounds from a designated compound library containing 2.5 million compounds using in silico methods and scoring. Our aim was to identify target enzyme inhibitors and to benchmark computer-aided drug discovery methods under the same experimental conditions. Collecting compound lists derived from various methods is advantageous for aggregating compounds with structurally diversified properties compared with the use of a single method. The inhibitory action on Sirtuin 1 of approximately half of the proposed compounds was experimentally accessed. Ultimately, seven structurally diverse compounds were identified.

Original language	English
Article number	19585
Journal	Scientific reports
Volume	9
Issue number	1
DOIs	https://doi.org/10.1038/s41598-019-55069-y
Publication status	Published - 2019 Dec 1

ASJC Scopus subject areas

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Chiba, S., Ohue, M., Gryniukova, A., Borysko, P., Zozulya, S., Yasuo, N., Yoshino, R., Ikeda, K., Shin, W. H., Kihara, D., Iwadate, M., Umeyama, H., Ichikawa, T., Teramoto, R., Hsin, K. Y., Gupta, V., Kitano, H., Sakamoto, M., Higuchi, A., ... Sekijima, M. (2019). A prospective compound screening contest identified broader inhibitors for Sirtuin 1. Scientific reports, 9(1), [19585]. https://doi.org/10.1038/s41598-019-55069-y

A prospective compound screening contest identified broader inhibitors for Sirtuin 1. / Chiba, Shuntaro; Ohue, Masahito; Gryniukova, Anastasiia; Borysko, Petro; Zozulya, Sergey; Yasuo, Nobuaki; Yoshino, Ryunosuke; Ikeda, Kazuyoshi; Shin, Woong Hee; Kihara, Daisuke; Iwadate, Mitsuo; Umeyama, Hideaki; Ichikawa, Takaaki; Teramoto, Reiji; Hsin, Kun Yi; Gupta, Vipul; Kitano, Hiroaki; Sakamoto, Mika; Higuchi, Akiko; Miura, Nobuaki; Yura, Kei; Mochizuki, Masahiro; Ramakrishnan, Chandrasekaran; Thangakani, A. Mary; Velmurugan, D.; Gromiha, M. Michael; Nakane, Itsuo; Uchida, Nanako; Hakariya, Hayase; Tan, Modong; Nakamura, Hironori K.; Suzuki, Shogo D.; Ito, Tomoki; Kawatani, Masahiro; Kudoh, Kentaroh; Takashina, Sakurako; Yamamoto, Kazuki Z.; Moriwaki, Yoshitaka; Oda, Keita; Kobayashi, Daisuke; Okuno, Tatsuya; Minami, Shintaro; Chikenji, George; Prathipati, Philip; Nagao, Chioko; Mohsen, Attayeb; Ito, Mari; Mizuguchi, Kenji; Honma, Teruki; Ishida, Takashi; Hirokawa, Takatsugu; Akiyama, Yutaka; Sekijima, Masakazu.

In: Scientific reports, Vol. 9, No. 1, 19585, 01.12.2019.

Research output: Contribution to journal › Article

Chiba, S, Ohue, M, Gryniukova, A, Borysko, P, Zozulya, S, Yasuo, N, Yoshino, R, Ikeda, K, Shin, WH, Kihara, D, Iwadate, M, Umeyama, H, Ichikawa, T, Teramoto, R, Hsin, KY, Gupta, V, Kitano, H, Sakamoto, M, Higuchi, A, Miura, N, Yura, K, Mochizuki, M, Ramakrishnan, C, Thangakani, AM, Velmurugan, D, Gromiha, MM, Nakane, I, Uchida, N, Hakariya, H, Tan, M, Nakamura, HK, Suzuki, SD, Ito, T, Kawatani, M, Kudoh, K, Takashina, S, Yamamoto, KZ, Moriwaki, Y, Oda, K, Kobayashi, D, Okuno, T, Minami, S, Chikenji, G, Prathipati, P, Nagao, C, Mohsen, A, Ito, M, Mizuguchi, K, Honma, T, Ishida, T, Hirokawa, T, Akiyama, Y & Sekijima, M 2019, 'A prospective compound screening contest identified broader inhibitors for Sirtuin 1', Scientific reports, vol. 9, no. 1, 19585. https://doi.org/10.1038/s41598-019-55069-y

Chiba, Shuntaro ; Ohue, Masahito ; Gryniukova, Anastasiia ; Borysko, Petro ; Zozulya, Sergey ; Yasuo, Nobuaki ; Yoshino, Ryunosuke ; Ikeda, Kazuyoshi ; Shin, Woong Hee ; Kihara, Daisuke ; Iwadate, Mitsuo ; Umeyama, Hideaki ; Ichikawa, Takaaki ; Teramoto, Reiji ; Hsin, Kun Yi ; Gupta, Vipul ; Kitano, Hiroaki ; Sakamoto, Mika ; Higuchi, Akiko ; Miura, Nobuaki ; Yura, Kei ; Mochizuki, Masahiro ; Ramakrishnan, Chandrasekaran ; Thangakani, A. Mary ; Velmurugan, D. ; Gromiha, M. Michael ; Nakane, Itsuo ; Uchida, Nanako ; Hakariya, Hayase ; Tan, Modong ; Nakamura, Hironori K. ; Suzuki, Shogo D. ; Ito, Tomoki ; Kawatani, Masahiro ; Kudoh, Kentaroh ; Takashina, Sakurako ; Yamamoto, Kazuki Z. ; Moriwaki, Yoshitaka ; Oda, Keita ; Kobayashi, Daisuke ; Okuno, Tatsuya ; Minami, Shintaro ; Chikenji, George ; Prathipati, Philip ; Nagao, Chioko ; Mohsen, Attayeb ; Ito, Mari ; Mizuguchi, Kenji ; Honma, Teruki ; Ishida, Takashi ; Hirokawa, Takatsugu ; Akiyama, Yutaka ; Sekijima, Masakazu. / A prospective compound screening contest identified broader inhibitors for Sirtuin 1. In: Scientific reports. 2019 ; Vol. 9, No. 1.

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abstract = "Potential inhibitors of a target biomolecule, NAD-dependent deacetylase Sirtuin 1, were identified by a contest-based approach, in which participants were asked to propose a prioritized list of 400 compounds from a designated compound library containing 2.5 million compounds using in silico methods and scoring. Our aim was to identify target enzyme inhibitors and to benchmark computer-aided drug discovery methods under the same experimental conditions. Collecting compound lists derived from various methods is advantageous for aggregating compounds with structurally diversified properties compared with the use of a single method. The inhibitory action on Sirtuin 1 of approximately half of the proposed compounds was experimentally accessed. Ultimately, seven structurally diverse compounds were identified.",

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