A scatterplot-based visual analytics tool for protein pocket properties

Makiko Miyoshi, Ayaka Kaneko, Takayuki Itoh, Kei Yura

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Protein is the major component of the organism. A hole (pocket) on the surface of a protein is known to be the best target for a drug to react. We started analyzing how 'drug ability' of proteins related to the locations amino acids in a pocket. This poster presents a visualization tool for a distance distribution analysis between two types of amino acids in a pocket and proposes the biological interpretation of the visualization results.

Original languageEnglish
Title of host publicationProceedings - 2013 International Conference on Cyberworlds, CW 2013
PublisherIEEE Computer Society
Number of pages1
ISBN (Print)9781479922451
DOIs
Publication statusPublished - 2013
Externally publishedYes
Event2013 International Conference on Cyberworlds, CW 2013 - Yokohama, Japan
Duration: 2013 Oct 212013 Oct 23

Other

Other2013 International Conference on Cyberworlds, CW 2013
CountryJapan
CityYokohama
Period13/10/2113/10/23

Fingerprint

Proteins
Amino acids
Visualization

Keywords

  • Amino acid
  • Pocket identification
  • Protein
  • Visualization

ASJC Scopus subject areas

  • Computer Networks and Communications

Cite this

Miyoshi, M., Kaneko, A., Itoh, T., & Yura, K. (2013). A scatterplot-based visual analytics tool for protein pocket properties. In Proceedings - 2013 International Conference on Cyberworlds, CW 2013 [6680153] IEEE Computer Society. https://doi.org/10.1109/CW.2013.25

A scatterplot-based visual analytics tool for protein pocket properties. / Miyoshi, Makiko; Kaneko, Ayaka; Itoh, Takayuki; Yura, Kei.

Proceedings - 2013 International Conference on Cyberworlds, CW 2013. IEEE Computer Society, 2013. 6680153.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Miyoshi, M, Kaneko, A, Itoh, T & Yura, K 2013, A scatterplot-based visual analytics tool for protein pocket properties. in Proceedings - 2013 International Conference on Cyberworlds, CW 2013., 6680153, IEEE Computer Society, 2013 International Conference on Cyberworlds, CW 2013, Yokohama, Japan, 13/10/21. https://doi.org/10.1109/CW.2013.25
Miyoshi M, Kaneko A, Itoh T, Yura K. A scatterplot-based visual analytics tool for protein pocket properties. In Proceedings - 2013 International Conference on Cyberworlds, CW 2013. IEEE Computer Society. 2013. 6680153 https://doi.org/10.1109/CW.2013.25
Miyoshi, Makiko ; Kaneko, Ayaka ; Itoh, Takayuki ; Yura, Kei. / A scatterplot-based visual analytics tool for protein pocket properties. Proceedings - 2013 International Conference on Cyberworlds, CW 2013. IEEE Computer Society, 2013.
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