An epigenetic regulatory element of the Nodal gene in the mouse and human genomes

Daisuke Arai, Koji Hayakawa, Jun Ohgane, Mitsuko Hirosawa, Youichi Nakao, Satoshi Tanaka, Kunio Shiota

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

Nodal signaling plays critical roles during embryonic development. The Nodal gene is not expressed in adult tissues but is frequently activated in cancer cells, contributing to progression toward malignancy. Although several regulatory elements of the Nodal gene have been identified, the epigenetic mechanisms by which Nodal expression is regulated over the long term remain unclear. We found a region exhibiting dynamic changes in DNA methylation at approximately -3.0 kb to -0.4 kb upstream from the transcriptional start site (TSS) that we termed the epigenetic regulatory element (ERE). The ERE was unmethylated in mouse embryonic stem cells (mESCs) but became increasingly methylated in differentiated cells and tissues, concomitant with the downregulation of Nodal mRNA expression. In vitro reporter assays identified an Oct3/4 binding motif within the ERE, indicating that the ERE is responsible for the activation of Nodal in mESCs. Furthermore, the ERE was a target of differentiation-associated Polycomb silencing, and the chromatin condensed when mESCs differentiated to embryoid bodies (EBs). Pharmacological inhibition of PRC2 led to the reactivation of Nodal expression in EBs and mouse embryonic fibroblasts (MEFs). The ERE was also targeted by PRC2 in normal human cells. In NODAL-expressing human cancer cells, accumulation of EZH2 and trimethylation of H3K27 at the ERE were diminished. In conclusion, Nodal is epigenetically controlled through the ERE in the mouse embryo and human cells.

Original languageEnglish
Pages (from-to)143-154
Number of pages12
JournalMechanisms of Development
Volume136
DOIs
Publication statusPublished - 2015 May 1

Fingerprint

Human Genome
Epigenomics
Genes
Embryoid Bodies
Neoplasms
DNA Methylation
Chromatin
Embryonic Development
Down-Regulation
Embryonic Structures
Fibroblasts
Pharmacology
Messenger RNA

Keywords

  • DNA methylation
  • Epigenetics
  • Nodal
  • Polycomb silencing
  • Regulatory element

ASJC Scopus subject areas

  • Developmental Biology
  • Embryology

Cite this

An epigenetic regulatory element of the Nodal gene in the mouse and human genomes. / Arai, Daisuke; Hayakawa, Koji; Ohgane, Jun; Hirosawa, Mitsuko; Nakao, Youichi; Tanaka, Satoshi; Shiota, Kunio.

In: Mechanisms of Development, Vol. 136, 01.05.2015, p. 143-154.

Research output: Contribution to journalArticle

Arai, Daisuke ; Hayakawa, Koji ; Ohgane, Jun ; Hirosawa, Mitsuko ; Nakao, Youichi ; Tanaka, Satoshi ; Shiota, Kunio. / An epigenetic regulatory element of the Nodal gene in the mouse and human genomes. In: Mechanisms of Development. 2015 ; Vol. 136. pp. 143-154.
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