Application of micro-reactor chip technique for millisecond quenching of deuterium incorporation into 70S ribosomal protein complex

Tatsuya Yamamoto, Yoshihiro Shimizu, Takuya Ueda, Yoshitsugu Shiro, Makoto Suematsu

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

The hydrogen/deuterium exchange (HDX) method is useful to analyze kinetics of large macromolecular complexes, although its time resolution requires further improvement. A newly developed micro-reactor chip was made of polydimethylsiloxane with a 100-μm deep and wide microchannel. The channel in the chip has two mixing points of Y-shaped flow and allowed us to shorten time durations from the start to quenching for the HDX in 70S ribosome with high temporal resolution. This device enabled us to quench the deuterium incorporation at as early as 20 ms, detecting structural changes of individual ribosomal proteins in solution at the time scale comparable to a single reaction cycle for the peptide elongation. The profile of deuterium incorporation in individual proteins of the complex was superimposed on the X-ray crystal structure to depict the surface HDX map, revealing localization of protein movement in the ribosome. The current method serves as a useful method to visualize the regional movement of large macromolecules with high temporal resolution sufficient to examine protein dynamics.

Original languageEnglish
Pages (from-to)132-138
Number of pages7
JournalInternational Journal of Mass Spectrometry
Volume302
Issue number1-3
DOIs
Publication statusPublished - 2011 Apr 30
Externally publishedYes

Fingerprint

Ribosomal Proteins
Deuterium
deuterium
Quenching
quenching
chips
reactors
proteins
Proteins
ribosomes
Hydrogen
temporal resolution
hydrogen
Macromolecular Substances
high resolution
Polydimethylsiloxane
microchannels
Microchannels
Macromolecules
macromolecules

Keywords

  • dynamics
  • H/D exchange
  • micro-reactor
  • rapid quenching
  • Ribosome

ASJC Scopus subject areas

  • Instrumentation
  • Condensed Matter Physics
  • Spectroscopy
  • Physical and Theoretical Chemistry

Cite this

Application of micro-reactor chip technique for millisecond quenching of deuterium incorporation into 70S ribosomal protein complex. / Yamamoto, Tatsuya; Shimizu, Yoshihiro; Ueda, Takuya; Shiro, Yoshitsugu; Suematsu, Makoto.

In: International Journal of Mass Spectrometry, Vol. 302, No. 1-3, 30.04.2011, p. 132-138.

Research output: Contribution to journalArticle

Yamamoto, Tatsuya ; Shimizu, Yoshihiro ; Ueda, Takuya ; Shiro, Yoshitsugu ; Suematsu, Makoto. / Application of micro-reactor chip technique for millisecond quenching of deuterium incorporation into 70S ribosomal protein complex. In: International Journal of Mass Spectrometry. 2011 ; Vol. 302, No. 1-3. pp. 132-138.
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