Composite kernel based SVM for hierarchical multi-label gene function classification

Benhui Chen, Lihua Duan, Takayuki Furuzuki

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Abstract

This paper proposes a hierarchical multi-label classification method based on SVM with composite kernel for solving gene function prediction. The hierarchical multi-label classification problem is resolved into a set of binary classification tasks. A composite kernel based SVM (ck-SVM) is introduced to deal with the binary classification tasks. In estimation procedure of ck-SVM, a supervised clustering with over-sampling strategy is introduced for solving imbalance dataset learning problem and improve classification performance. Experimental results on benchmark datasets demonstrate that the proposed method improves the classification performance efficiently.

Original languageEnglish
Title of host publicationProceedings of the International Joint Conference on Neural Networks
DOIs
Publication statusPublished - 2012
Event2012 Annual International Joint Conference on Neural Networks, IJCNN 2012, Part of the 2012 IEEE World Congress on Computational Intelligence, WCCI 2012 - Brisbane, QLD
Duration: 2012 Jun 102012 Jun 15

Other

Other2012 Annual International Joint Conference on Neural Networks, IJCNN 2012, Part of the 2012 IEEE World Congress on Computational Intelligence, WCCI 2012
CityBrisbane, QLD
Period12/6/1012/6/15

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Labels
Genes
Composite materials
Sampling

ASJC Scopus subject areas

  • Software
  • Artificial Intelligence

Cite this

Chen, B., Duan, L., & Furuzuki, T. (2012). Composite kernel based SVM for hierarchical multi-label gene function classification. In Proceedings of the International Joint Conference on Neural Networks [6252555] https://doi.org/10.1109/IJCNN.2012.6252555

Composite kernel based SVM for hierarchical multi-label gene function classification. / Chen, Benhui; Duan, Lihua; Furuzuki, Takayuki.

Proceedings of the International Joint Conference on Neural Networks. 2012. 6252555.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chen, B, Duan, L & Furuzuki, T 2012, Composite kernel based SVM for hierarchical multi-label gene function classification. in Proceedings of the International Joint Conference on Neural Networks., 6252555, 2012 Annual International Joint Conference on Neural Networks, IJCNN 2012, Part of the 2012 IEEE World Congress on Computational Intelligence, WCCI 2012, Brisbane, QLD, 12/6/10. https://doi.org/10.1109/IJCNN.2012.6252555
Chen B, Duan L, Furuzuki T. Composite kernel based SVM for hierarchical multi-label gene function classification. In Proceedings of the International Joint Conference on Neural Networks. 2012. 6252555 https://doi.org/10.1109/IJCNN.2012.6252555
Chen, Benhui ; Duan, Lihua ; Furuzuki, Takayuki. / Composite kernel based SVM for hierarchical multi-label gene function classification. Proceedings of the International Joint Conference on Neural Networks. 2012.
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