Exonuclease processivity of archaeal replicative DNA polymerase in association with PCNA is expedited by mismatches in DNA

Takuya Yoda, Maiko Tanabe, Toshiyuki Tsuji, Takao Yoda, Sonoko Ishino, Tsuyoshi Shirai, Yoshizumi Ishino, Haruko Takeyama, Hirokazu Nishida

    Research output: Contribution to journalArticle

    1 Citation (Scopus)

    Abstract

    Family B DNA polymerases comprise polymerase and 3′ ->5′ exonuclease domains, and detect a mismatch in a newly synthesized strand to remove it in cooperation with Proliferating cell nuclear antigen (PCNA), which encircles the DNA to provide a molecular platform for efficient protein-protein and protein-DNA interactions during DNA replication and repair. Once the repair is completed, the enzyme must stop the exonucleolytic process and switch to the polymerase mode. However, the cue to stop the degradation is unclear. We constructed several PCNA mutants and found that the exonuclease reaction was enhanced in the mutants lacking the conserved basic patch, located on the inside surface of PCNA. These mutants may mimic the Pol/PCNA complex processing the mismatched DNA, in which PCNA cannot interact rigidly with the irregularly distributed phosphate groups outside the dsDNA. Indeed, the exonuclease reaction with the wild type PCNA was facilitated by mismatched DNA substrates. PCNA may suppress the exonuclease reaction after the removal of the mismatched nucleotide. PCNA seems to act as a "brake" that stops the exonuclease mode of the DNA polymerase after the removal of a mismatched nucleotide from the substrate DNA, for the prompt switch to the DNA polymerase mode.

    Original languageEnglish
    Article number44582
    JournalScientific Reports
    Volume7
    DOIs
    Publication statusPublished - 2017 Mar 16

    Fingerprint

    Archaeal DNA
    Exonucleases
    Proliferating Cell Nuclear Antigen
    DNA-Directed DNA Polymerase
    DNA
    Nucleotides
    Phosphodiesterase I
    Proteins
    Antigen Presentation
    DNA Replication
    DNA Repair
    Cues
    Phosphates

    ASJC Scopus subject areas

    • General

    Cite this

    Exonuclease processivity of archaeal replicative DNA polymerase in association with PCNA is expedited by mismatches in DNA. / Yoda, Takuya; Tanabe, Maiko; Tsuji, Toshiyuki; Yoda, Takao; Ishino, Sonoko; Shirai, Tsuyoshi; Ishino, Yoshizumi; Takeyama, Haruko; Nishida, Hirokazu.

    In: Scientific Reports, Vol. 7, 44582, 16.03.2017.

    Research output: Contribution to journalArticle

    Yoda, Takuya ; Tanabe, Maiko ; Tsuji, Toshiyuki ; Yoda, Takao ; Ishino, Sonoko ; Shirai, Tsuyoshi ; Ishino, Yoshizumi ; Takeyama, Haruko ; Nishida, Hirokazu. / Exonuclease processivity of archaeal replicative DNA polymerase in association with PCNA is expedited by mismatches in DNA. In: Scientific Reports. 2017 ; Vol. 7.
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    AU - Tsuji, Toshiyuki

    AU - Yoda, Takao

    AU - Ishino, Sonoko

    AU - Shirai, Tsuyoshi

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