Exploitation of an additional hydrophobic pocket of σ 1 receptors: Late-stage diverse modifications of spirocyclic thiophenes by C-H bond functionalization

Christina Meyer, Benedikt Neue, Dirk Schepmann, Shuichi Yanagisawa, Junichiro Yamaguchi, Ernst Ulrich Würthwein, Kenichiro Itami, Bernhard Wünsch

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

The hypothesis that the σ 1 receptor will tolerate an additional aryl moiety in position 1 of the spirocyclic system was based on spirocyclic pyrazole derivatives, pharmacophore models of σ 1 receptor ligands and DFT calculations. The strategy of introducing the aryl residue at the final step of the synthesis allowed the preparation of a large set of diverse ligands for the exploitation of the hydrophobic pocket of the σ 1 receptor protein. The catalyst system PdCl 2/2,2′-bipyridyl/Ag 2CO 3 is able to introduce various aryl groups onto the α-positions of spirocyclic thiophene derivatives 5 and 6 to afford the target aryl-appended spirocyclic thiophenes 3 and 4. Although the σ 1 affinity of the 1-phenyl substituted spirocyclic thiophenes 3a and 4a is slightly reduced compared with the σ 1 affinity of the non-arylated compounds 5 and 6, both compounds represent very potent σ 1 receptor ligands (3a: K i = 4.5 nM; 4a: K i = 1.0 nM). This result indicates that an aryl moiety in position 1 is well tolerated by the σ 1 receptor protein. The substitution pattern of the additional phenyl moiety has only weak effects on the σ 1 affinity. Even ligands 3f and 4h with extended naphthyl residue show high σ 1 affinity. However, decrease of σ 1 affinity by extension of the π-system to a biphenylyl substituent (4j: K i = 30 nM) indicates that the biphenylyl residue is too large for the primary hydrophobic binding pocket of the σ 1 receptor.

Original languageEnglish
Pages (from-to)8016-8029
Number of pages14
JournalOrganic and Biomolecular Chemistry
Volume9
Issue number23
DOIs
Publication statusPublished - 2011 Dec 7
Externally publishedYes

ASJC Scopus subject areas

  • Biochemistry
  • Physical and Theoretical Chemistry
  • Organic Chemistry

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