Guide DNA technique reveals that the protein component of bacterial ribonuclease P is a modifier for substrate recognition

Terumichi Tanaka, Hideo Baba, Yoshiaki Hori, Yo Kikuchi

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

We developed a guide DNA technique with which the cleavage efficiency of pre-tRNA substrate raised in the RNase P reaction. The 20-mer guide DNAs hybridizing to the upstream region of the cleaving site enhanced the cleavage reactions of RNA substrates by Escherichia coli RNase P. This guide DNA technique was also applicable to cleavage site selection by choosing the DNA-hybridizing site. Results showed that RNase P accepts DNA/RNA double-stranded 5′-leader region with high catalytic efficiency as well as single-stranded RNA region in pre-tRNAs as substrates, which suggests that the protein component of bacterial RNase P prefers bulky nucleotides. The protein component did not affect the normal 5′-processing reaction of pre-tRNAs, but enhanced the mis-cleaving (hyperprocessing) reactions of tRNA in non-cloverleaf folding. Our results suggested that the protein component of RNase P is a modifier for substrate recognition.

Original languageEnglish
Pages (from-to)94-98
Number of pages5
JournalFEBS Letters
Volume491
Issue number1-2
DOIs
Publication statusPublished - 2001 Feb 23
Externally publishedYes

Fingerprint

Ribonuclease P
Bacterial Proteins
RNA Precursors
DNA
Substrates
Proteins
RNA Cleavage
RNA
Site selection
Double-Stranded RNA
Transfer RNA
Escherichia coli
Nucleotides
Processing

Keywords

  • C5 protein
  • Hyperprocessing
  • M1 RNA
  • Ribozyme
  • RNase P
  • tRNA

ASJC Scopus subject areas

  • Biochemistry
  • Biophysics
  • Molecular Biology

Cite this

Guide DNA technique reveals that the protein component of bacterial ribonuclease P is a modifier for substrate recognition. / Tanaka, Terumichi; Baba, Hideo; Hori, Yoshiaki; Kikuchi, Yo.

In: FEBS Letters, Vol. 491, No. 1-2, 23.02.2001, p. 94-98.

Research output: Contribution to journalArticle

Tanaka, Terumichi ; Baba, Hideo ; Hori, Yoshiaki ; Kikuchi, Yo. / Guide DNA technique reveals that the protein component of bacterial ribonuclease P is a modifier for substrate recognition. In: FEBS Letters. 2001 ; Vol. 491, No. 1-2. pp. 94-98.
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