Abstract
Remarkable progress has been made in genome science during the past decade, but understanding of genomes of eukaryotes is far from complete. We have created DNA flexibility maps of the human, mouse, fruit fly, and nematode chromosomes. The maps revealed that all of these chromosomes have markedly flexible DNA regions (We named them SPIKEs). SPIKEs occur more frequently in the human chromosomes than in the mouse, fruit fly, and nematode chromosomes. Markedly rigid DNA regions (rSPIKEs) are also present in these chromosomes. The ratio of the number of SPIKEs to the total number of SPIKEs and rSPIKEs correlated positively with evolutionary stage among the organisms. Repetitive DNA sequences with flexible and rigid properties contribute to the formation of SPIKEs and rSPIKEs respectively. However, non-repetitive flexible and rigid sequences appear to play a major role in SPIKE and rSPIKE formation respectively. They might be involved in the genome-folding mechanism of eukaryotes.
| Original language | English |
|---|---|
| Pages (from-to) | 612-617 |
| Number of pages | 6 |
| Journal | Bioscience, Biotechnology and Biochemistry |
| Volume | 77 |
| Issue number | 3 |
| DOIs | |
| Publication status | Published - 2013 |
Fingerprint
Keywords
- Eukaryotic genome
- Flexibility map
- Genome evolution
- Genome folding
- Repetitive DNA
ASJC Scopus subject areas
- Biotechnology
- Biochemistry
- Molecular Biology
- Applied Microbiology and Biotechnology
- Analytical Chemistry
- Organic Chemistry
Cite this
Regions of unusually high flexibility occur frequently in human genomic DNA. / Kimura, Hajime; Kageyama, Dai; Furuya, Mika; Sugiyama, Shigeru; Murata, Noboru; Ohyama, Takashi.
In: Bioscience, Biotechnology and Biochemistry, Vol. 77, No. 3, 2013, p. 612-617.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Regions of unusually high flexibility occur frequently in human genomic DNA
AU - Kimura, Hajime
AU - Kageyama, Dai
AU - Furuya, Mika
AU - Sugiyama, Shigeru
AU - Murata, Noboru
AU - Ohyama, Takashi
PY - 2013
Y1 - 2013
N2 - Remarkable progress has been made in genome science during the past decade, but understanding of genomes of eukaryotes is far from complete. We have created DNA flexibility maps of the human, mouse, fruit fly, and nematode chromosomes. The maps revealed that all of these chromosomes have markedly flexible DNA regions (We named them SPIKEs). SPIKEs occur more frequently in the human chromosomes than in the mouse, fruit fly, and nematode chromosomes. Markedly rigid DNA regions (rSPIKEs) are also present in these chromosomes. The ratio of the number of SPIKEs to the total number of SPIKEs and rSPIKEs correlated positively with evolutionary stage among the organisms. Repetitive DNA sequences with flexible and rigid properties contribute to the formation of SPIKEs and rSPIKEs respectively. However, non-repetitive flexible and rigid sequences appear to play a major role in SPIKE and rSPIKE formation respectively. They might be involved in the genome-folding mechanism of eukaryotes.
AB - Remarkable progress has been made in genome science during the past decade, but understanding of genomes of eukaryotes is far from complete. We have created DNA flexibility maps of the human, mouse, fruit fly, and nematode chromosomes. The maps revealed that all of these chromosomes have markedly flexible DNA regions (We named them SPIKEs). SPIKEs occur more frequently in the human chromosomes than in the mouse, fruit fly, and nematode chromosomes. Markedly rigid DNA regions (rSPIKEs) are also present in these chromosomes. The ratio of the number of SPIKEs to the total number of SPIKEs and rSPIKEs correlated positively with evolutionary stage among the organisms. Repetitive DNA sequences with flexible and rigid properties contribute to the formation of SPIKEs and rSPIKEs respectively. However, non-repetitive flexible and rigid sequences appear to play a major role in SPIKE and rSPIKE formation respectively. They might be involved in the genome-folding mechanism of eukaryotes.
KW - Eukaryotic genome
KW - Flexibility map
KW - Genome evolution
KW - Genome folding
KW - Repetitive DNA
UR - http://www.scopus.com/inward/record.url?scp=84876377929&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84876377929&partnerID=8YFLogxK
U2 - 10.1271/bbb.120850
DO - 10.1271/bbb.120850
M3 - Article
C2 - 23470768
AN - SCOPUS:84876377929
VL - 77
SP - 612
EP - 617
JO - Bioscience, Biotechnology and Biochemistry
JF - Bioscience, Biotechnology and Biochemistry
SN - 0916-8451
IS - 3
ER -