Selection of a platinum-binding sequence in a loop of a four-helix bundle protein

Sota Yagi, Satoshi Akanuma, Asumi Kaji, Hiroya Niiro, Hayato Akiyama, Tatsuya Uchida, Akihiko Yamagishi

    Research output: Contribution to journalArticle

    Abstract

    Protein-metal hybrids are functional materials with various industrial applications. For example, a redox enzyme immobilized on a platinum electrode is a key component of some biofuel cells and biosensors. To create these hybrid materials, protein molecules are bound to metal surfaces. Here, we report the selection of a novel platinum-binding sequence in a loop of a four-helix bundle protein, the Lac repressor four-helix protein (LARFH), an artificial protein in which four identical α-helices are connected via three identical loops. We created a genetic library in which the Ser-Gly-Gln-Gly-Gly-Ser sequence within the first inter-helical loop of LARFH was semi-randomly mutated. The library was then subjected to selection for platinum-binding affinity by using the T7 phage display method. The majority of the selected variants contained the Tyr-Lys-Arg-Gly-Tyr-Lys (YKRGYK) sequence in their randomized segment. We characterized the platinum-binding properties of mutant LARFH by using quartz crystal microbalance analysis. Mutant LARFH seemed to interact with platinum through its loop containing the YKRGYK sequence, as judged by the estimated exclusive area occupied by a single molecule. Furthermore, a 10-residue peptide containing the YKRGYK sequence bound to platinum with reasonably high affinity and basic side chains in the peptide were crucial in mediating this interaction. In conclusion, we have identified an amino acid sequence, YKRGYK, in the loop of a helix-loop-helix motif that shows high platinum-binding affinity. This sequence could be grafted into loops of other polypeptides as an approach to immobilize proteins on platinum electrodes for use as biosensors among other applications.

    Original languageEnglish
    JournalJournal of Bioscience and Bioengineering
    DOIs
    Publication statusAccepted/In press - 2017

    Fingerprint

    Platinum
    Proteins
    Lac Repressors
    Hybrid materials
    Biosensing Techniques
    Biosensors
    Peptides
    Libraries
    Electrodes
    Helix-Loop-Helix Motifs
    Metals
    Bioelectric Energy Sources
    Quartz Crystal Microbalance Techniques
    Biological fuel cells
    Bacteriophage T7
    Immobilized Enzymes
    Molecules
    Bacteriophages
    Functional materials
    Quartz crystal microbalances

    Keywords

    • Alanine scanning
    • Atomic force microscopy
    • Flow-quartz crystal microbalance
    • Four-helix bundle
    • Metal-binding sequence
    • Phage display

    ASJC Scopus subject areas

    • Biotechnology
    • Bioengineering
    • Applied Microbiology and Biotechnology

    Cite this

    Selection of a platinum-binding sequence in a loop of a four-helix bundle protein. / Yagi, Sota; Akanuma, Satoshi; Kaji, Asumi; Niiro, Hiroya; Akiyama, Hayato; Uchida, Tatsuya; Yamagishi, Akihiko.

    In: Journal of Bioscience and Bioengineering, 2017.

    Research output: Contribution to journalArticle

    Yagi, Sota ; Akanuma, Satoshi ; Kaji, Asumi ; Niiro, Hiroya ; Akiyama, Hayato ; Uchida, Tatsuya ; Yamagishi, Akihiko. / Selection of a platinum-binding sequence in a loop of a four-helix bundle protein. In: Journal of Bioscience and Bioengineering. 2017.
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    AU - Akiyama, Hayato

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