Single nucleotide polymorphism analysis using a bacterial magnetic particle microarray

Tomoko Yoshino, Haruko Takeyama, Tadashi Matsunaga

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

An approach to analyzing single nucleotide polymorphism (SNP) found in the human genome has been developed using a bacterial magnetic particle (BMP) microarray. Streptavidin was bound to BMPs using biotin labeled cross-linkers reacting with the amine group on BMPs. PCR was performed using TRITC and biotin labeled primer pairs for amplification of ALDH2 fragment. PCR products were conjugated with BMPs by the interactions of biotin-streptavidin. DNA-BMP complexes were spotted on a slide-glass, immobilized magnetically then treated with a restriction enzyme specifically digesting the wild-type sequences (normal allele of ALDH2). The homozygous (ALDH2*1/*1), heterozygous (ALDH2*1/*2), and mutant (ALDH2*2/*2) genotypes were successfully discriminated by imaging the BMP microarray before and after digestion and measuring spot fluorescence intensities on the slide glass.

Original languageEnglish
Pages (from-to)1008-1012
Number of pages5
JournalElectrochemistry
Volume69
Issue number12
Publication statusPublished - 2001 Dec
Externally publishedYes

Fingerprint

Microarrays
Biotin
Nucleotides
Polymorphism
Streptavidin
Glass
Bacterial DNA
Amines
Amplification
DNA
Enzymes
Genes
Fluorescence
Imaging techniques

Keywords

  • Bacterial Magnetic Particle (BMP)
  • Cross-linker
  • Microarray
  • Single Nucleotide Polymorphism (SNP)

ASJC Scopus subject areas

  • Electrochemistry

Cite this

Single nucleotide polymorphism analysis using a bacterial magnetic particle microarray. / Yoshino, Tomoko; Takeyama, Haruko; Matsunaga, Tadashi.

In: Electrochemistry, Vol. 69, No. 12, 12.2001, p. 1008-1012.

Research output: Contribution to journalArticle

Yoshino, Tomoko ; Takeyama, Haruko ; Matsunaga, Tadashi. / Single nucleotide polymorphism analysis using a bacterial magnetic particle microarray. In: Electrochemistry. 2001 ; Vol. 69, No. 12. pp. 1008-1012.
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