Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region

Takaaki Yokomine, Hisao Shirohzu, Wahyu Purbowasito, Atsushi Toyoda, Hisakazu Iwama, Kazuho Ikeo, Tetsuya Hori, Shigeki Mizuno, Masaoki Tsudzuki, Yoh Ichi Matsuda, Masahira Hattori, Yoshiyuki Sakaki, Hiroyuki Sasaki

Research output: Contribution to journalArticle

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Abstract

Previous studies revealed that Igf2 and Mpr/Igf2r are imprinted in eutherian mammals and marsupials but not in monotremes or birds. Igf2 lies in a large imprinted cluster in eutherians, and its imprinting is regulated by long-range mechanisms. As a step to understand how the imprinted cluster evolved, we have determined a 490-kb chicken sequence containing the orthologs of mammalian Ascl2/Mash2, Ins2 and Igf2. We found that most of the genes in this region are conserved between chickens and mammals, maintaining the same transcriptional polarities and exon-intron structures. However, H19, an imprinted noncoding transcript, was absent from the chicken sequence. Chicken ASCL2/CASH4 and INS, the orthologs of the imprinted mammalian genes, showed biallelic expression, further supporting the notion that imprinting evolved after the divergence of mammals and birds. The H19 imprinting center and many of the local regulatory elements identified in mammals were not found in chickens. Also, a large segment of tandem repeats and retroelements identified between the two imprinted subdomains in mice was not found in chickens. Our findings show that the imprinted genes were clustered before the emergence of imprinting and that the elements associated with imprinting probably evolved after the divergence of mammals and birds.

Original languageEnglish
Pages (from-to)154-165
Number of pages12
JournalGenome Research
Volume15
Issue number1
DOIs
Publication statusPublished - 2005 Jan
Externally publishedYes

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Chickens
Mammals
Birds
Genes
Marsupialia
Retroelements
Tandem Repeat Sequences
Introns
Exons

ASJC Scopus subject areas

  • Genetics

Cite this

Yokomine, T., Shirohzu, H., Purbowasito, W., Toyoda, A., Iwama, H., Ikeo, K., ... Sasaki, H. (2005). Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region. Genome Research, 15(1), 154-165. https://doi.org/10.1101/gr.2609605

Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region. / Yokomine, Takaaki; Shirohzu, Hisao; Purbowasito, Wahyu; Toyoda, Atsushi; Iwama, Hisakazu; Ikeo, Kazuho; Hori, Tetsuya; Mizuno, Shigeki; Tsudzuki, Masaoki; Matsuda, Yoh Ichi; Hattori, Masahira; Sakaki, Yoshiyuki; Sasaki, Hiroyuki.

In: Genome Research, Vol. 15, No. 1, 01.2005, p. 154-165.

Research output: Contribution to journalArticle

Yokomine, T, Shirohzu, H, Purbowasito, W, Toyoda, A, Iwama, H, Ikeo, K, Hori, T, Mizuno, S, Tsudzuki, M, Matsuda, YI, Hattori, M, Sakaki, Y & Sasaki, H 2005, 'Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region', Genome Research, vol. 15, no. 1, pp. 154-165. https://doi.org/10.1101/gr.2609605
Yokomine, Takaaki ; Shirohzu, Hisao ; Purbowasito, Wahyu ; Toyoda, Atsushi ; Iwama, Hisakazu ; Ikeo, Kazuho ; Hori, Tetsuya ; Mizuno, Shigeki ; Tsudzuki, Masaoki ; Matsuda, Yoh Ichi ; Hattori, Masahira ; Sakaki, Yoshiyuki ; Sasaki, Hiroyuki. / Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region. In: Genome Research. 2005 ; Vol. 15, No. 1. pp. 154-165.
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