Two tandemly arrayed transfer-RNA-derived SINEs of the medaka (Oryzias latipes)

Naoko Amano, Haruko Takeyama, Takehiko Kusama, Mitsuru Sakaizumi, Takashi Oshiro, Tadashi Matsunaga

Research output: Contribution to journalArticle

Abstract

Two tandemly arrayed short interspersed repetitive element (SINE) sequences were found in medaka (Oryzias latipes). These two SINE sequences, designated SINE1 and SINE2, were flanked by a 180-bp AT-rich region. Both appeared to be derived from transfer RNA. The former exhibited 80% sequence homology to human tRNA(Ala) and the latter exhibited 94% sequence homology to rat tRNA(Ser). SINE1 contained the retroviral U5 region, whereas SINE2 did not. This is the first sequence-level demonstration of the existence of neighboring SINEs in medaka.

Original languageEnglish
Pages (from-to)399-403
Number of pages5
JournalMarine Biotechnology
Volume2
Issue number4
Publication statusPublished - 2000 Jan 1
Externally publishedYes

Keywords

  • Medaka
  • Oryzias latipes
  • SINE sequences
  • tRNA

ASJC Scopus subject areas

  • Biotechnology
  • Aquatic Science

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    Amano, N., Takeyama, H., Kusama, T., Sakaizumi, M., Oshiro, T., & Matsunaga, T. (2000). Two tandemly arrayed transfer-RNA-derived SINEs of the medaka (Oryzias latipes). Marine Biotechnology, 2(4), 399-403.