Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system

Chie Takemoto, Linda L. Spremulli, Lisa A. Benkowski, Takuya Ueda, Takashi Yokogawa, Kimitsuna Watanabe

Research output: Contribution to journalArticle

51 Citations (Scopus)

Abstract

Mitochondrial (mt) tRNAMet has the unusual modified nucleotide 5-formylcytidine (f5C) in the first position of the anticodon. This tRNA must translate both AUG and AUA as methionine. By constructing an in vitro translation system from bovine liver mitochondria, we examined the decoding properties of the native mt tRNAMet carrying f5C in the anticodon compared to a transcript that lacks the modification. The native mt Met-tRNA could recognize both AUA and AUG codons as Met, but the corresponding synthetic tRNAMet lacking f5C (anticodon CAU), recognized only the AUG codon in both the codon-dependent ribosomal binding and in vitro translation assays. Furthermore, the Escherichia coli elongator tRNAMetm with the anticodon ac4CAU (ac4C-4-acetylcytidine) and the bovine cytoplasmic initiator tRNAMet (anticodon CAU) translated only the AUG codon for Met on mt ribosome. The codon recognition patterns of these tRNAs were the same on E. coli ribosomes. These results demonstrate that the f5C modification in mt tRNAMet plays a crucial role in decoding the nonuniversal AUA codon as Met, and that the genetic code variation is compensated by a change in the tRNA anticodon, not by a change in the ribosome. Base pairing models of f5C-G and f5C-A based on the chemical properties of f5C are presented.

Original languageEnglish
Pages (from-to)1616-1627
Number of pages12
JournalNucleic acids research
Volume37
Issue number5
DOIs
Publication statusPublished - 2009 Apr 2
Externally publishedYes

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RNA, Transfer, Met
Anticodon
Codon
Methionine
Transfer RNA
Ribosomes
Escherichia coli
Genetic Code
Liver Mitochondrion
Base Pairing
In Vitro Techniques
Nucleotides

ASJC Scopus subject areas

  • Genetics

Cite this

Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system. / Takemoto, Chie; Spremulli, Linda L.; Benkowski, Lisa A.; Ueda, Takuya; Yokogawa, Takashi; Watanabe, Kimitsuna.

In: Nucleic acids research, Vol. 37, No. 5, 02.04.2009, p. 1616-1627.

Research output: Contribution to journalArticle

Takemoto, Chie ; Spremulli, Linda L. ; Benkowski, Lisa A. ; Ueda, Takuya ; Yokogawa, Takashi ; Watanabe, Kimitsuna. / Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system. In: Nucleic acids research. 2009 ; Vol. 37, No. 5. pp. 1616-1627.
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