Kana Shimizu

Scopus著者プロファイル

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年別の研究成果

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18 Article
9 Conference contribution
1 Conference article

18 件

フィルター

2022
Efficient privacy-preserving variable-length substring match for genome sequence
Nakagawa, Y., Ohata, S. & Shimizu, K., 2022 12月, In: Algorithms for Molecular Biology. 17, 1, 9.
研究成果: Article › 査読

Open Access
2019
Secure wavelet matrix: Alphabet-friendly privacy-preserving string search for bioinformatics
Sudo, H., Jimbo, M., Nuida, K. & Shimizu, K., 2019 9月, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 5, p. 1675-1684 10 p., 3370684.
研究成果: Article › 査読

Open Access
9 被引用数 (Scopus)
2018
Discovery of cryoprotective activity in human genome-derived intrinsically disordered proteins
Matsuo, N., Goda, N., Shimizu, K., Fukuchi, S., Ota, M. & Hiroaki, H., 2018 2月, In: International journal of molecular sciences. 19, 2, 401.
研究成果: Article › 査読

Open Access
8 被引用数 (Scopus)
2016
Efficient privacy-preserving string search and an application in genomics
Shimizu, K., Nuida, K. & Rätsch, G., 2016 6月 1, In: Bioinformatics. 32, 11, p. 1652-1661 10 p.
研究成果: Article › 査読

Open Access
38 被引用数 (Scopus)
2015
A method for systematic assessment of intrinsically disordered protein regions by NMR
Goda, N., Shimizu, K., Kuwahara, Y., Tenno, T., Noguchi, T., Ikegami, T., Ota, M. & Hiroaki, H., 2015 7月 10, In: International journal of molecular sciences. 16, 7, p. 15743-15760 18 p.
研究成果: Article › 査読

Open Access
7 被引用数 (Scopus)
Privacy-preserving search for chemical compound databases
Shimizu, K., Nuida, K., Arai, H., Mitsunari, S., Attrapadung, N., Hamada, M., Tsuda, K., Hirokawa, T., Sakuma, J., Hanaoka, G. & Asai, K., 2015 12月 9, In: BMC Bioinformatics. 16, 18, S6.
研究成果: Article › 査読
9 被引用数 (Scopus)
2014
POODLE: Tools Predicting Intrinsically Disordered Regions of Amino Acid Sequence
Shimizu, K., 2014, In: Methods in Molecular Biology. 1137, p. 131-145 15 p.
研究成果: Article › 査読
4 被引用数 (Scopus)
Reference-free prediction of rearrangement breakpoint reads
Wijaya, E., Shimizu, K., Asai, K. & Hamada, M., 2014 9月 15, In: Bioinformatics. 30, 18, p. 2559-2567 9 p.
研究成果: Article › 査読

Open Access
5 被引用数 (Scopus)
2012
PDB-scale analysis of known and putative ligand-binding sites with structural sketches
Ito, J. I., Tabei, Y., Shimizu, K., Tomii, K. & Tsuda, K., 2012 3月, In: Proteins: Structure, Function and Bioinformatics. 80, 3, p. 747-763 17 p.
研究成果: Article › 査読
20 被引用数 (Scopus)
PoSSuM: A database of similar protein-ligand binding and putative pockets
Ito, J. I., Tabei, Y., Shimizu, K., Tsuda, K. & Tomii, K., 2012 1月, In: Nucleic acids research. 40, D1, p. D541-D548
研究成果: Article › 査読
45 被引用数 (Scopus)
2011
SAHG, a comprehensive database of predicted structures of all human proteins
Motono, C., Nakata, J., Koike, R., Shimizu, K., Shirota, M., Amemiya, T., Tomii, K., Nagano, N., Sakaya, N., Misoo, K., Sato, M., Kidera, A., Hiroaki, H., Shirai, T., Kinoshita, K., Noguchi, T. & Ota, M., 2011 1月, In: Nucleic acids research. 39, SUPPL. 1, p. D487-D493
研究成果: Article › 査読
10 被引用数 (Scopus)
Slidesort: All pairs similarity search for short reads
Shimizu, K. & Tsuda, K., 2011 2月, In: Bioinformatics. 27, 4, p. 464-470 7 p., btq677.
研究成果: Article › 査読

Open Access
17 被引用数 (Scopus)
2010
POODLE-I: Disordered region prediction by integrating POODLE series and structural information predictors based on a workflow approach
Hirose, S., Shimizu, K. & Noguchi, T., 2010 12月 1, In: In Silico Biology. 10, 3-4, p. 185-191 7 p.
研究成果: Article › 査読
18 被引用数 (Scopus)
2009
Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein-Protein Interaction Network
Shimizu, K. & Toh, H., 2009 10月 9, In: Journal of Molecular Biology. 392, 5, p. 1253-1265 13 p.
研究成果: Article › 査読
53 被引用数 (Scopus)
2007
POODLE-L: A two-level SVM prediction system for reliably predicting long disordered regions
Hirose, S., Shimizu, K., Kanai, S., Kuroda, Y. & Noguchi, T., 2007 8月 15, In: Bioinformatics. 23, 16, p. 2046-2053 8 p.
研究成果: Article › 査読

Open Access
121 被引用数 (Scopus)
POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix
Shimizu, K., Hirose, S. & Noguchi, T., 2007 9月 1, In: Bioinformatics. 23, 17, p. 2337-2338 2 p.
研究成果: Article › 査読

Open Access
99 被引用数 (Scopus)
Predicting mostly disordered proteins by using structure-unknown protein data
Shimizu, K., Muraoka, Y., Hirose, S., Tomii, K. & Noguchi, T., 2007 3月 6, In: BMC Bioinformatics. 8, 78.
研究成果: Article › 査読

Open Access
59 被引用数 (Scopus)
2006
Angle: A sequencing errors resistant program for predicting protein coding regions in unfinished cDNA
Shimizu, K., Adachi, J. & Muraoka, Y., 2006 6月, In: Journal of Bioinformatics and Computational Biology. 4, 3, p. 649-664 16 p.
研究成果: Article › 査読
72 被引用数 (Scopus)

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