由良 敬

教授(任期付)

  • 1381 引用
  • 18 h指数
1993 …2019

Research output per year

Pureに変更を加えた場合、すぐここに表示されます。

研究成果

2019

Engineered Functional Recovery of Microbial Rhodopsin without Retinal-Binding Lysine

Yamauchi, Y., Konno, M., Yamada, D., Yura, K., Inoue, K., Béjà, O. & Kandori, H., 2019 1 1, : : Photochemistry and Photobiology.

研究成果: Article

2018

Starfish Apaf-1 activates effector caspase-3/9 upon apoptosis of aged eggs

Tamura, R., Takada, M., Sakaue, M., Yoshida, A., Ohi, S., Hirano, K., Hayakawa, T., Hirohashi, N., Yura, K. & Chiba, K., 2018 12 1, : : Scientific Reports. 8, 1, 1611.

研究成果: Article

4 引用 (Scopus)

Synaptic transmission from subplate neurons controls radial migration of neocortical neurons

Ohtaka-Maruyama, C., Okamoto, M., Endo, K., Oshima, M., Kaneko, N., Yura, K., Okado, H., Miyata, T. & Maeda, N., 2018 4 20, : : Science. 360, 6386, p. 313-317 5 p.

研究成果: Article

24 引用 (Scopus)
2017

REFOLDdb: A new and sustainable gateway to experimental protocols for protein refolding

Mizutani, H., Sugawara, H., Buckle, A. M., Sangawa, T., Miyazono, K. I., Ohtsuka, J., Nagata, K., Shojima, T., Nosaki, S., Xu, Y., Wang, D., Hu, X., Tanokura, M. & Yura, K., 2017 4 24, : : BMC Structural Biology. 17, 1, 4.

研究成果: Article

2 引用 (Scopus)
2016

Complete genome sequence of the mitochondrial DNA of the sparkling enope squid, Watasenia scintillans

Hayashi, K., Kawai, Y. L., Yura, K., Yoshida, M. A., Ogura, A., Hata, K., Nakabayashi, K. & Okamura, K., 2016 5 1, : : Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis. 27, 3, p. 1842-1843 2 p.

研究成果: Article

2 引用 (Scopus)

Druggability analysis and prediction based on geometric distances between amino acid residues and protein surface pockets

Miyoshi, M., Kaneko, A., Itoh, T., Yura, K. & Takatsuka, M., 2016 9 9, Proceedings - NICOGRAPH International 2016, NicoInt 2016. Institute of Electrical and Electronics Engineers Inc., p. 21-24 4 p. 7564039

研究成果: Conference contribution

VaProS: a database-integration approach for protein/genome information retrieval

Gojobori, T., Ikeo, K., Katayama, Y., Kawabata, T., Kinjo, A. R., Kinoshita, K., Kwon, Y., Migita, O., Mizutani, H., Muraoka, M., Nagata, K., Omori, S., Sugawara, H., Yamada, D. & Yura, K., 2016 12 1, : : Journal of structural and functional genomics. 17, 4, p. 69-81 13 p.

研究成果: Article

5 引用 (Scopus)
2015

Biochemical analysis of phytolacca DOPA dioxygenase

Takahashi, K., Yoshida, K., Yura, K., Ashihara, H. & Sakuta, M., 2015, : : Natural Product Communications. 10, 5, p. 717-719 3 p.

研究成果: Article

1 引用 (Scopus)

Complete genome sequence of the mitochondrial DNA of the river lamprey, Lethenteron japonicum

Kawai, Y. L., Yura, K., Shindo, M., Kusakabe, R., Hayashi, K., Hata, K., Nakabayashi, K. & Okamura, K., 2015 11 2, : : Mitochondrial DNA. 26, 6, p. 863-864 2 p.

研究成果: Article

2 引用 (Scopus)

Design and synthesis of 4-benzyl-1-(2H)-phthalazinone derivatives as novel androgen receptor antagonists

Inoue, K., Urushibara, K., Kanai, M., Yura, K., Fujii, S., Ishigami-Yuasa, M., Hashimoto, Y., Mori, S., Kawachi, E., Matsumura, M., Hirano, T., Kagechika, H. & Tanatani, A., 2015 9 18, : : European Journal of Medicinal Chemistry. 102, p. 310-319 10 p., 8038.

研究成果: Article

12 引用 (Scopus)

Distinct evolutionary rate in the eye field transcription factors found by estimation of ancestral protein structure

Kamijyo, A., Yura, K. & Ogura, A., 2015 1 25, : : Gene. 555, 2, p. 73-79 7 p.

研究成果: Article

3 引用 (Scopus)
7 引用 (Scopus)
3 引用 (Scopus)
2014

A visual analytics of geometric distances between amino acids and surface pockets of proteins

Miyoshi, M., Kaneko, A., Itoh, T. & Yura, K., 2014 9 18, Proceedings - 2014 18th International Conference on Information Visualisation: Visualisation, BioMedical Visualization, Visualisation on Built and Rural Environments and Geometric Modelling and Imaging, IV 2014. Marchese, F. T., Cvek, U., Trutschl, M., Grinstein, G., Ursyn, A., Venturini, G., Wyeld, T. G., Kenderdine, S., Bouali, F., Sarfraz, M., Banissi, E., Bannatyne, M. W. M., Geroimenko, V., Kenderdine, S. & Kenderdine, S. (版). Institute of Electrical and Electronics Engineers Inc., p. 164-169 6 p. 6902898. (Proceedings of the International Conference on Information Visualisation).

研究成果: Conference contribution

1 引用 (Scopus)

Cephalopod eye evolution was modulated by the acquisition of Pax-6 splicing variants

Yoshida, M. A., Yura, K. & Ogura, A., 2014 3 5, : : Scientific reports. 4, 4256.

研究成果: Article

16 引用 (Scopus)

Conformational behavior of flavin adenine dinucleotide: Conserved stereochemistry in bound and free states

Kuppuraj, G., Kruise, D. & Yura, K., 2014 11 26, : : Journal of Physical Chemistry B. 118, 47, p. 13486-13497 12 p.

研究成果: Article

9 引用 (Scopus)

Structural insights of post-translational modification sites in the proteome of Thermus thermophilus

Masui, R., Takahata, Y., Inoue, M., Iio, Y., Okanishi, H., Kim, K., Nakagawa, N., Yura, K. & Kuramitsu, S., 2014 9 1, : : Journal of Structural and Functional Genomics. 15, 3, p. 137-151 15 p.

研究成果: Article

3 引用 (Scopus)

Structure of the Microtubule-Binding Domain of Flagellar Dynein

Kato, Y. S., Yagi, T., Harris, S. A., Ohki, S. Y., Yura, K., Shimizu, Y., Honda, S., Kamiya, R., Burgess, S. A. & Tanokura, M., 2014 11 4, : : Structure. 22, 11, p. 1628-1638 11 p.

研究成果: Article

12 引用 (Scopus)

A bicyclic 1-deoxygalactonojirimycin derivative as a novel pharmacological chaperone for GM1 gangliosidosis

Takai, T., Higaki, K., Aguilar-Moncayo, M., Mena-Barragán, T., Hirano, Y., Yura, K., Yu, L., Ninomiya, H., García-Moreno, M. I., Sakakibara, Y., Ohno, K., Nanba, E., Ortiz Mellet, C., García Fernández, J. M. & Suzuki, Y., 2013 3, : : Molecular Therapy. 21, 3, p. 526-532 7 p.

研究成果: Article

48 引用 (Scopus)

A scatterplot-based visual analytics tool for protein pocket properties

Miyoshi, M., Kaneko, A., Itoh, T. & Yura, K., 2013 1 1, Proceedings - 2013 International Conference on Cyberworlds, CW 2013. IEEE Computer Society, 1 p. 6680153. (Proceedings - 2013 International Conference on Cyberworlds, CW 2013).

研究成果: Conference contribution

9 引用 (Scopus)

Distinct conformation of ATP molecule in solution and on protein

Kobayashi, E., Yura, K. & Nagai, Y., 2013 1 28, : : Biophysics (Japan). 9, p. 1-12 12 p.

研究成果: Article

6 引用 (Scopus)

Human origin recognition complex binds preferentially to G-quadruplex-preferable RNA and single-stranded DNA

Hoshina, S., Yura, K., Teranishi, H., Kiyasu, N., Tominaga, A., Kadoma, H., Nakatsuka, A., Kunichika, T., Obuse, C. & Waga, S., 2013 10 18, : : Journal of Biological Chemistry. 288, 42, p. 30161-30171 11 p.

研究成果: Article

54 引用 (Scopus)

Molecular and clinical characteristics of MSH6 germline variants detected in colorectal cancer patients

Terui, H., Tachikawa, T., Kakuta, M., Nishimura, Y., Yatsuoka, T., Yamaguchi, K., Yura, K. & Akagi, K., 2013 12 1, : : Oncology Reports. 30, 6, p. 2909-2916 8 p.

研究成果: Article

8 引用 (Scopus)
2012

Tuning glycosidase inhibition through aglycone interactions: Pharmacological chaperones for Fabry disease and GM1 gangliosidosis

Aguilar-Moncayo, M., Takai, T., Higaki, K., Mena-Barragán, T., Hirano, Y., Yura, K., Li, L., Yu, Y., Ninomiya, H., García-Moreno, M. I., Ishii, S., Sakakibara, Y., Ohno, K., Nanba, E., Ortiz Mellet, C., García Fernández, J. M. & Suzuki, Y., 2012 6 6, : : Chemical Communications. 48, 52, p. 6514-6516 3 p.

研究成果: Article

42 引用 (Scopus)
2011
17 引用 (Scopus)
2009

[Structural bioinformatics].

Yura, K., Shionyu, M. & Toh, H., 2009 9 1, : : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 54, 12 Suppl, p. 1535-1541 7 p.

研究成果: Review article

RESOPS: A database for analyzing the correspondence of rna editing sites to protein three-dimensional structures

Yura, K., Sulaiman, S., Hatta, Y., Shionyu, M. & Go, M., 2009 11 1, : : Plant and Cell Physiology. 50, 11, p. 1865-1873 9 p.

研究成果: Article

17 引用 (Scopus)

The interwinding nature of protein protein interfaces and its implication for protein complex formation

Yura, K. & Hayward, S., 2009 9 29, : : Bioinformatics. 25, 23, p. 3108-3113 6 p., btp563.

研究成果: Article

13 引用 (Scopus)
2008

Characteristics and prediction of rna editing sites in transcripts of the moss takakia lepidozioides chloroplast

Yura, K., Miyata, Y., Arikawa, T., Higuchi, M. & Sugita, M., 2008 12 1, : : DNA Research. 15, 5, p. 309-321 13 p.

研究成果: Article

9 引用 (Scopus)

ColiSNP database server mapping nsSNPs on protein structures

Kono, H., Yuasa, T., Nishiue, S. & Yura, K., 2008 1 1, : : Nucleic acids research. 36, SUPPL. 1, p. D409-D413

研究成果: Article

17 引用 (Scopus)
22 引用 (Scopus)

Discrimination of class i cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue

Miyazawa, Y., Nishioka, H., Yura, K. & Yamato, T., 2008 3 15, : : Biophysical Journal. 94, 6, p. 2194-2203 10 p.

研究成果: Article

17 引用 (Scopus)

Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis

Matsumoto, A., Kamata, T., Takagi, J., Iwasaki, K. & Yura, K., 2008 9 15, : : Biophysical Journal. 95, 6, p. 2895-2908 14 p.

研究成果: Article

14 引用 (Scopus)

Prediction of Molecular Interactions from 3D-Structures: From Small Ligands to Large Protein Complexes

Kinoshita, K., Kono, H. & Yura, K., 2008 12 18, Prediction of Protein Structures, Functions, and Interactions. John Wiley & Sons, Ltd, p. 159-186 28 p.

研究成果: Chapter

1 引用 (Scopus)

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Genome Information Integration Project and H-Invitational 2 Consortium, 2008 1, : : Nucleic acids research. 36, SUPPL. 1, p. D793-D799

研究成果: Article

55 引用 (Scopus)
2007
5 引用 (Scopus)
2006

Alternative splicing in human transcriptome: Functional and structural influence on proteins

Yura, K., Shionyu, M., Hagino, K., Hijikata, A., Hirashima, Y., Nakahara, T., Eguchi, T., Shinoda, K., Yamaguchi, A., Takahashi, K. I., Itoh, T., Imanishi, T., Gojobori, T. & Go, M., 2006 10 1, : : Gene. 380, 2, p. 63-71 9 p.

研究成果: Article

47 引用 (Scopus)
86 引用 (Scopus)
14 引用 (Scopus)

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs

Takeda, J. I., Suzuki, Y., Nakao, M., Barrero, R. A., Koyanagi, K. O., Jin, L., Motono, C., Hata, H., Isogai, T., Nagai, K., Otsuki, T., Kuryshev, V., Shionyu, M., Yura, K., Go, M., Thierry-Mieg, J., Thierry-Mieg, D., Wiemann, S., Nomura, N., Sugano, S. および2人, Gojobori, T. & Iman ishi, T., 2006 9 21, : : Nucleic acids research. 34, 14, p. 3917-3928 12 p.

研究成果: Article

32 引用 (Scopus)

Toward building grid applications in bioinformatics

Gong, X., Nakamura, K., Yura, K. & Go, N., 2006 12 1, ACSW Frontiers 2006 - Proc. of the Fourth Australasian Symposium on Grid Computing and e-Research, AusGrid 2006 and the Fourth Australasian Information Security Workshop (Network Security), AISW 2006. p. 17-24 8 p. (Conferences in Research and Practice in Information Technology Series; 巻数 54).

研究成果: Conference contribution

25 引用 (Scopus)

Het-PDB Navi. A Database for Protein-Small Molecule Interactions

Yamaguchi, A., Iida, K., Matsui, N., Tomoda, S., Yura, K. & Go, M., 2004 1 1, : : Journal of biochemistry. 135, 1, p. 79-84 6 p.

研究成果: Article

33 引用 (Scopus)