Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response

Yukie Kashima, Ayako Suzuki, Ying Liu, Masahito Hosokawa, Hiroko Matsunaga, Masataka Shirai, Kohji Arikawa, Sumio Sugano, Takashi Kohno, Haruko Takeyama, Katsuya Tsuchihara, Yutaka Suzuki

研究成果: Article

3 引用 (Scopus)

抄録

Single-cell RNA-seq is a powerful tool for revealing heterogeneity in cancer cells. However, each of the current single-cell RNA-seq platforms has inherent advantages and disadvantages. Here, we show that combining the different single-cell RNA-seq platforms can be an effective approach to obtaining complete information about expression differences and a sufficient cellular population to understand transcriptional heterogeneity in cancers. We demonstrate that it is possible to estimate missing expression information. We further demonstrate that even in the cases where precise information for an individual gene cannot be inferred, the activity of given transcriptional modules can be analyzed. Interestingly, we found that two distinct transcriptional modules, one associated with the Aurora kinase gene and the other with the DUSP gene, are aberrantly regulated in a minor population of cells and may thus contribute to the possible emergence of dormancy or eventual drug resistance within the population.

元の言語English
記事番号3482
ジャーナルScientific Reports
8
発行部数1
DOI
出版物ステータスPublished - 2018 12 1

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Transcriptome
RNA
Aurora Kinases
Population
Genes
Drug Resistance
Neoplasms

ASJC Scopus subject areas

  • General

これを引用

Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response. / Kashima, Yukie; Suzuki, Ayako; Liu, Ying; Hosokawa, Masahito; Matsunaga, Hiroko; Shirai, Masataka; Arikawa, Kohji; Sugano, Sumio; Kohno, Takashi; Takeyama, Haruko; Tsuchihara, Katsuya; Suzuki, Yutaka.

:: Scientific Reports, 巻 8, 番号 1, 3482, 01.12.2018.

研究成果: Article

Kashima, Y, Suzuki, A, Liu, Y, Hosokawa, M, Matsunaga, H, Shirai, M, Arikawa, K, Sugano, S, Kohno, T, Takeyama, H, Tsuchihara, K & Suzuki, Y 2018, 'Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response', Scientific Reports, 巻. 8, 番号 1, 3482. https://doi.org/10.1038/s41598-018-21161-y
Kashima, Yukie ; Suzuki, Ayako ; Liu, Ying ; Hosokawa, Masahito ; Matsunaga, Hiroko ; Shirai, Masataka ; Arikawa, Kohji ; Sugano, Sumio ; Kohno, Takashi ; Takeyama, Haruko ; Tsuchihara, Katsuya ; Suzuki, Yutaka. / Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response. :: Scientific Reports. 2018 ; 巻 8, 番号 1.
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AU - Shirai, Masataka

AU - Arikawa, Kohji

AU - Sugano, Sumio

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