Conformational analysis of nucleic acid molecules with flexible furanose rings in dihedral angle space

Masaki Tomimoto, Nobuhiro Go, Hiroshi Wako

研究成果: Article査読

4 被引用数 (Scopus)

抄録

The computational algorithm that works in the coordinate space of dihedral angles (i.e., bond lengths and bond angles are kept fixed and only rotatable dihedral angles are treated as independent variables) is extended to deal with the pseudorotational motion of furanose rings by introducing a variable of pseudorotation. Then, this algorithm is applied to a distance geometry calculation that generates three-dimensional (3D) structures that are consistent with given constraints of interatomic distances. This method efficiently generates 3D structures of an RNA hairpin loop which satisfy a set of experimental NMR data.

本文言語English
ページ(範囲)910-917
ページ数8
ジャーナルJournal of Computational Chemistry
17
7
DOI
出版ステータスPublished - 1996 5

ASJC Scopus subject areas

  • 化学 (全般)
  • 計算数学

フィンガープリント

「Conformational analysis of nucleic acid molecules with flexible furanose rings in dihedral angle space」の研究トピックを掘り下げます。これらがまとまってユニークなフィンガープリントを構成します。

引用スタイル