Enlarged FAMSBASE: Protein 3D structure models of genome sequences for 41 species

Akihiro Yamaguchi, Mitsuo Iwadate, Ei Ichiro Suzuki, Kei Yura, Shigetsugu Kawakita, Hideaki Umeyama, Mitiko Go

研究成果: Review article

17 引用 (Scopus)

抄録

Enlarged FAMSBASE is a relational database of comparative protein structure models for the whole genome of 41 species, presented in the GTOP database. The models are calculated by Full Automatic Modeling System (FAMS). Enlarged FAMSBASE provides a wide range of query keys, such as name of ORF (open reading frame), ORF keywords, Protein Data Bank (PDB) ID, PDB heterogen atoms and sequence similarity. Heterogen atoms in PDB include cofactors, ligands and other factors that interact with proteins, and are a good starting point for analyzing interactions, between proteins and other molecules. The data may also work as a template for drug design. The present number of ORFs with protein 3D models in FAMSBASE is 183805, and the database includes an average of three models for each ORF. FAMSBASE is available at http://famsbase.bio. nagoya-u.ac.jp/famsbase/.

元の言語English
ページ(範囲)463-468
ページ数6
ジャーナルNucleic Acids Research
31
発行部数1
DOI
出版物ステータスPublished - 2003 1 1
外部発表Yes

Fingerprint

Genome
Open Reading Frames
Databases
Proteins
Protein Databases
Drug Design
Names
Ligands

ASJC Scopus subject areas

  • Genetics

これを引用

Yamaguchi, A., Iwadate, M., Suzuki, E. I., Yura, K., Kawakita, S., Umeyama, H., & Go, M. (2003). Enlarged FAMSBASE: Protein 3D structure models of genome sequences for 41 species. Nucleic Acids Research, 31(1), 463-468. https://doi.org/10.1093/nar/gkg117

Enlarged FAMSBASE : Protein 3D structure models of genome sequences for 41 species. / Yamaguchi, Akihiro; Iwadate, Mitsuo; Suzuki, Ei Ichiro; Yura, Kei; Kawakita, Shigetsugu; Umeyama, Hideaki; Go, Mitiko.

:: Nucleic Acids Research, 巻 31, 番号 1, 01.01.2003, p. 463-468.

研究成果: Review article

Yamaguchi, A, Iwadate, M, Suzuki, EI, Yura, K, Kawakita, S, Umeyama, H & Go, M 2003, 'Enlarged FAMSBASE: Protein 3D structure models of genome sequences for 41 species', Nucleic Acids Research, 巻. 31, 番号 1, pp. 463-468. https://doi.org/10.1093/nar/gkg117
Yamaguchi, Akihiro ; Iwadate, Mitsuo ; Suzuki, Ei Ichiro ; Yura, Kei ; Kawakita, Shigetsugu ; Umeyama, Hideaki ; Go, Mitiko. / Enlarged FAMSBASE : Protein 3D structure models of genome sequences for 41 species. :: Nucleic Acids Research. 2003 ; 巻 31, 番号 1. pp. 463-468.
@article{1ab331f9a67a4263954497bbed9ed437,
title = "Enlarged FAMSBASE: Protein 3D structure models of genome sequences for 41 species",
abstract = "Enlarged FAMSBASE is a relational database of comparative protein structure models for the whole genome of 41 species, presented in the GTOP database. The models are calculated by Full Automatic Modeling System (FAMS). Enlarged FAMSBASE provides a wide range of query keys, such as name of ORF (open reading frame), ORF keywords, Protein Data Bank (PDB) ID, PDB heterogen atoms and sequence similarity. Heterogen atoms in PDB include cofactors, ligands and other factors that interact with proteins, and are a good starting point for analyzing interactions, between proteins and other molecules. The data may also work as a template for drug design. The present number of ORFs with protein 3D models in FAMSBASE is 183805, and the database includes an average of three models for each ORF. FAMSBASE is available at http://famsbase.bio. nagoya-u.ac.jp/famsbase/.",
author = "Akihiro Yamaguchi and Mitsuo Iwadate and Suzuki, {Ei Ichiro} and Kei Yura and Shigetsugu Kawakita and Hideaki Umeyama and Mitiko Go",
year = "2003",
month = "1",
day = "1",
doi = "10.1093/nar/gkg117",
language = "English",
volume = "31",
pages = "463--468",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "1",

}

TY - JOUR

T1 - Enlarged FAMSBASE

T2 - Protein 3D structure models of genome sequences for 41 species

AU - Yamaguchi, Akihiro

AU - Iwadate, Mitsuo

AU - Suzuki, Ei Ichiro

AU - Yura, Kei

AU - Kawakita, Shigetsugu

AU - Umeyama, Hideaki

AU - Go, Mitiko

PY - 2003/1/1

Y1 - 2003/1/1

N2 - Enlarged FAMSBASE is a relational database of comparative protein structure models for the whole genome of 41 species, presented in the GTOP database. The models are calculated by Full Automatic Modeling System (FAMS). Enlarged FAMSBASE provides a wide range of query keys, such as name of ORF (open reading frame), ORF keywords, Protein Data Bank (PDB) ID, PDB heterogen atoms and sequence similarity. Heterogen atoms in PDB include cofactors, ligands and other factors that interact with proteins, and are a good starting point for analyzing interactions, between proteins and other molecules. The data may also work as a template for drug design. The present number of ORFs with protein 3D models in FAMSBASE is 183805, and the database includes an average of three models for each ORF. FAMSBASE is available at http://famsbase.bio. nagoya-u.ac.jp/famsbase/.

AB - Enlarged FAMSBASE is a relational database of comparative protein structure models for the whole genome of 41 species, presented in the GTOP database. The models are calculated by Full Automatic Modeling System (FAMS). Enlarged FAMSBASE provides a wide range of query keys, such as name of ORF (open reading frame), ORF keywords, Protein Data Bank (PDB) ID, PDB heterogen atoms and sequence similarity. Heterogen atoms in PDB include cofactors, ligands and other factors that interact with proteins, and are a good starting point for analyzing interactions, between proteins and other molecules. The data may also work as a template for drug design. The present number of ORFs with protein 3D models in FAMSBASE is 183805, and the database includes an average of three models for each ORF. FAMSBASE is available at http://famsbase.bio. nagoya-u.ac.jp/famsbase/.

UR - http://www.scopus.com/inward/record.url?scp=0037250367&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0037250367&partnerID=8YFLogxK

U2 - 10.1093/nar/gkg117

DO - 10.1093/nar/gkg117

M3 - Review article

C2 - 12520053

AN - SCOPUS:0037250367

VL - 31

SP - 463

EP - 468

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - 1

ER -