Enlarged FAMSBASE: Protein 3D structure models of genome sequences for 41 species

Akihiro Yamaguchi, Mitsuo Iwadate, Ei Ichiro Suzuki, Kei Yura, Shigetsugu Kawakita, Hideaki Umeyama, Mitiko Go

研究成果: Review article査読

17 被引用数 (Scopus)

抄録

Enlarged FAMSBASE is a relational database of comparative protein structure models for the whole genome of 41 species, presented in the GTOP database. The models are calculated by Full Automatic Modeling System (FAMS). Enlarged FAMSBASE provides a wide range of query keys, such as name of ORF (open reading frame), ORF keywords, Protein Data Bank (PDB) ID, PDB heterogen atoms and sequence similarity. Heterogen atoms in PDB include cofactors, ligands and other factors that interact with proteins, and are a good starting point for analyzing interactions, between proteins and other molecules. The data may also work as a template for drug design. The present number of ORFs with protein 3D models in FAMSBASE is 183805, and the database includes an average of three models for each ORF. FAMSBASE is available at http://famsbase.bio. nagoya-u.ac.jp/famsbase/.

本文言語English
ページ(範囲)463-468
ページ数6
ジャーナルNucleic acids research
31
1
DOI
出版ステータスPublished - 2003 1 1
外部発表はい

ASJC Scopus subject areas

  • 遺伝学

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