TY - GEN
T1 - GT U-Net
T2 - 12th International Workshop on Machine Learning in Medical Imaging, MLMI 2021, held in conjunction with 24th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2021
AU - Li, Yunxiang
AU - Wang, Shuai
AU - Wang, Jun
AU - Zeng, Guodong
AU - Liu, Wenjun
AU - Zhang, Qianni
AU - Jin, Qun
AU - Wang, Yaqi
N1 - Funding Information:
Acknowledgements. This work was supported by the National Key Research and Development Program of China (Grant No. 2019YFC0118404) and Public Projects of Zhejiang Province (Grant No. LGG20F020001).
Publisher Copyright:
© 2021, Springer Nature Switzerland AG.
PY - 2021
Y1 - 2021
N2 - To achieve an accurate assessment of root canal therapy, a fundamental step is to perform tooth root segmentation on oral X-ray images, in that the position of tooth root boundary is significant anatomy information in root canal therapy evaluation. However, the fuzzy boundary makes the tooth root segmentation very challenging. In this paper, we propose a novel end-to-end U-Net like Group Transformer Network (GT U-Net) for the tooth root segmentation. The proposed network retains the essential structure of U-Net but each of the encoders and decoders is replaced by a group Transformer, which significantly reduces the computational cost of traditional Transformer architectures by using the grouping structure and the bottleneck structure. In addition, the proposed GT U-Net is composed of a hybrid structure of convolution and Transformer, which makes it independent of pre-training weights. For optimization, we also propose a shape-sensitive Fourier Descriptor (FD) loss function to make use of shape prior knowledge. Experimental results show that our proposed network achieves the state-of-the-art performance on our collected tooth root segmentation dataset and the public retina dataset DRIVE. Code has been released at https://github.com/Kent0n-Li/GT-U-Net.
AB - To achieve an accurate assessment of root canal therapy, a fundamental step is to perform tooth root segmentation on oral X-ray images, in that the position of tooth root boundary is significant anatomy information in root canal therapy evaluation. However, the fuzzy boundary makes the tooth root segmentation very challenging. In this paper, we propose a novel end-to-end U-Net like Group Transformer Network (GT U-Net) for the tooth root segmentation. The proposed network retains the essential structure of U-Net but each of the encoders and decoders is replaced by a group Transformer, which significantly reduces the computational cost of traditional Transformer architectures by using the grouping structure and the bottleneck structure. In addition, the proposed GT U-Net is composed of a hybrid structure of convolution and Transformer, which makes it independent of pre-training weights. For optimization, we also propose a shape-sensitive Fourier Descriptor (FD) loss function to make use of shape prior knowledge. Experimental results show that our proposed network achieves the state-of-the-art performance on our collected tooth root segmentation dataset and the public retina dataset DRIVE. Code has been released at https://github.com/Kent0n-Li/GT-U-Net.
KW - Group transformer
KW - Image segmentation
KW - Root canal therapy
KW - Shape-sensitive loss
UR - http://www.scopus.com/inward/record.url?scp=85116449831&partnerID=8YFLogxK
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U2 - 10.1007/978-3-030-87589-3_40
DO - 10.1007/978-3-030-87589-3_40
M3 - Conference contribution
AN - SCOPUS:85116449831
SN - 9783030875886
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 386
EP - 395
BT - Machine Learning in Medical Imaging - 12th International Workshop, MLMI 2021, Held in Conjunction with MICCAI 2021, Proceedings
A2 - Lian, Chunfeng
A2 - Cao, Xiaohuan
A2 - Rekik, Islem
A2 - Xu, Xuanang
A2 - Yan, Pingkun
PB - Springer Science and Business Media Deutschland GmbH
Y2 - 27 September 2021 through 27 September 2021
ER -