MitoFish and mifish pipeline: A mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding

Yukuto Sato*, Masaki Miya, Tsukasa Fukunaga, Tetsuya Sado, Wataru Iwasaki

*この研究の対応する著者

研究成果: Article査読

60 被引用数 (Scopus)

抄録

Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of MitoFish, which is a database of fish mitogenomes with a precise annotation pipeline MitoAnnotator. Most importantly, we describe implementation of MiFish pipeline for metabarcoding analysis of fish mitochondrial environmental DNA, which is a fast-emerging and powerful technology in fish studies. MitoFish, MitoAnnotator, and MiFish pipeline constitute a key platform for studies of fish evolution, ecology, and conservation, and are freely available at http://mitofish.aori.u-Tokyo.ac.jp/ (last accessed April 7th, 2018).

本文言語English
ページ(範囲)1553-1555
ページ数3
ジャーナルMolecular Biology and Evolution
35
6
DOI
出版ステータスPublished - 2018 6
外部発表はい

ASJC Scopus subject areas

  • 生態、進化、行動および分類学
  • 分子生物学
  • 遺伝学

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