Promoter recognition for E. coli DNA segments by independent component analysis

Yasuo Matsuyama, Ryo Kawamura

    研究成果: Conference contribution

    7 引用 (Scopus)

    抄録

    A new method for E. coli DNA segment classification on promoters and non-promoters is presented. The algorithm is based on the Independent Component Analysis (ICA). Since the DNA segments are composed of discrete symbols, this paper contains two major steps: (1) Position-dependent transformation of DNA segments to real number sequences, and (2) Applications of the ICA to the E. coli promoter recognition. These steps are related to each other. Therefore, algorithmic explanations are given in detail while referring mutually. The automatic precision of 93.7% is obtained. Since the presented method allows threshold adjustments, twilight-zone data can be further cross-checked individually so that false negatives are reduced.

    元の言語English
    ホスト出版物のタイトルProceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004
    ページ686-691
    ページ数6
    出版物ステータスPublished - 2004
    イベントProceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004 - Stanford, CA
    継続期間: 2004 8 162004 8 19

    Other

    OtherProceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004
    Stanford, CA
    期間04/8/1604/8/19

    Fingerprint

    Independent component analysis
    Escherichia coli
    DNA

    ASJC Scopus subject areas

    • Engineering(all)

    これを引用

    Matsuyama, Y., & Kawamura, R. (2004). Promoter recognition for E. coli DNA segments by independent component analysis. : Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004 (pp. 686-691)

    Promoter recognition for E. coli DNA segments by independent component analysis. / Matsuyama, Yasuo; Kawamura, Ryo.

    Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. 2004. p. 686-691.

    研究成果: Conference contribution

    Matsuyama, Y & Kawamura, R 2004, Promoter recognition for E. coli DNA segments by independent component analysis. : Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. pp. 686-691, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, 04/8/16.
    Matsuyama Y, Kawamura R. Promoter recognition for E. coli DNA segments by independent component analysis. : Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. 2004. p. 686-691
    Matsuyama, Yasuo ; Kawamura, Ryo. / Promoter recognition for E. coli DNA segments by independent component analysis. Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. 2004. pp. 686-691
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