Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization

Yuichi Nishitani, Riku Aono, Akira Nakamura, Takaaki Sato, Haruyuki Atomi, Tadayuki Imanaka, Kunio Miki

研究成果: Article

4 引用 (Scopus)

抜粋

AMP phosphorylase (AMPpase) catalyzes the initial reaction in a novel AMP metabolic pathway recently found in archaea, converting AMP and phosphate into adenine and ribose 1,5-bisphosphate. Gel-filtration chromatography revealed that AMPpase from Thermococcus kodakarensis (Tk-AMPpase) forms an exceptionally large macromolecular structure (> 40-mers) in solution. To investigate its unique multimerization feature, we determined the first crystal structures of Tk-AMPpase, in the apo-form and in complex with substrates. Structures of two truncated forms of Tk-AMPpase (Tk-AMPpaseΔN84 and Tk-AMPpaseΔC10) clarified that this multimerization is achieved by two dimer interfaces within a single molecule: one by the central domain and the other by the C-terminal domain, which consists of an unexpected domain-swapping interaction. The N-terminal domain, characteristic of archaeal enzymes, is essential for enzymatic activity, participating in multimerization as well as domain closure of the active site upon substrate binding. Moreover, biochemical analysis demonstrated that the macromolecular assembly of Tk-AMPpase contributes to its high thermostability, essential for an enzyme from a hyperthermophile. Our findings unveil a unique archaeal nucleotide phosphorylase that is distinct in both function and structure from previously known members of the nucleoside phosphorylase II family.

元の言語English
ページ(範囲)2709-2721
ページ数13
ジャーナルJournal of Molecular Biology
425
発行部数15
DOI
出版物ステータスPublished - 2013 8 9

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ASJC Scopus subject areas

  • Structural Biology
  • Molecular Biology

これを引用

Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., & Miki, K. (2013). Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization. Journal of Molecular Biology, 425(15), 2709-2721. https://doi.org/10.1016/j.jmb.2013.04.026